RnoEX0065565 @ rn6
Exon Skipping
Gene
ENSRNOG00000005569 | Phospho1
Description
phosphoethanolamine/phosphocholine phosphatase 1 [Source:RGD Symbol;Acc:1306182]
Coordinates
chr10:83636518-83643859:+
Coord C1 exon
chr10:83636518-83636732
Coord A exon
chr10:83640369-83640480
Coord C2 exon
chr10:83642188-83643859
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCCCCCTTCCCAGGAG
3' ss Score
10.38
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TGGGCCCGGGTGCTGCGGCTGCCGCAGCGCCCGCCGCGGCTCGGGCTCTGGCTCCCCGGCATTTAAAGGGGACGCGGCGGCGGCCCCGGGGATGGGGGGCAGGTGGAAGGGACGGAGCAGAAGCACATCATCCACGGTCCCTCGGGGCTGGAGGGACGCGTGAGCCGGAGCTCAGAAATCCGGGGGTGGATAAGACCGCGTCCCCCCCAATTCCC
Seq A exon
GAGCTCTGGATGACAACTGGAGACCAACCAAGTTTCTAAAGGTGGAACTCAGGATAATACACTGACAATGAGTGGGTGCTTTCCGGTTGTTGGATTGCGATGCCTGTCTAGG
Seq C2 exon
GTCTTGGATGTGCCAGCGACCCTGGCTGTGGCCCGCTAATCAGCCTCTCCCTGGCCGGCTCCCGCCGCGCCGCCTCTCGCTTGCCCCCTCCTCCTGCTCCTCTTCCCCCTGCTCCCAGGACGGCAGGATGGCCGCGCCGGGCGCGCCTCGCTTCCTCCTGACCTTCGACTTCGATGAGACCATTGTGGATGAGAACAGCGACGACTCGATCGTGCGTGCTGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGGGAGGGCTACTACAATGAGTACATGCAACGCGTCTTCAAGTACCTGGGTGAGCAGGGAGTACGGCCCCGGGACCTGCGCGCTGTCTACGAGACCATCCCCCTGTCGCCAGGCATGGGCGATTTGTTGCAGTTCATAGCCAAACAGGGCTCCTGCTTCGAGGTTATTCTCATTTCGGATGCCAACACCTTCGGTGTGGAGAGTGCCCTGCGTGCCGCTGGCCACCACAGTTTATTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005569-'1-9,'1-3,5-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=82.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAAATCCGGGGGTGGA
R:
CGTCGCTGTTCTCATCCACAA
Band lengths:
248-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]