GgaINT0143072 @ galGal4
Intron Retention
Gene
ENSGALG00000001281 | PHOSPHO1
Description
phosphoethanolamine/phosphocholine phosphatase [Source:RefSeq peptide;Acc:NP_990176]
Coordinates
chr27:3414761-3417057:+
Coord C1 exon
chr27:3414761-3414877
Coord A exon
chr27:3414878-3415627
Coord C2 exon
chr27:3415628-3417057
Length
750 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CGCTCTTCTCCCCCCTGCAGGGT
3' ss Score
12.87
Exon sequences
Seq C1 exon
TGAGGAGCCCAACACAGAGAGCCCTAAACGGGACCTTCAGCAAAGCGGTGCTCGGAGAGTGATGGTCTTAAAATGAAAAGGTGCTGTGAGGGTGTTGGGCTGCCATGCCTGTTTAAG
Seq A exon
GTCAGTGTGATTCTCTGTGTTTTCACCTCTCTGTCTCTTCTCGGGGTCAGGGAGCAGAAGTGAGGTCCCTGTCCTGCATGTCTGATTGGCGGCAGGCAGTGAGCAGAGGCTGCAGGGTTTGGCACTGGGCCTGGGCCGAGGCTGTCCAGCTCTGTGTGTTGCCAGCAATGTGGTTTTACTTTGGAGAGAAGGGCAGACCCCACCTCTGAGCCCAACCCAAGGGAAACCACATCCAGGTGACAGCACAAAAATTAACCTGCACAATCTTTTCTTTTCCAAGGAAAAACCATTCTTGTCCTTGCAAGGATGGCAGCAAGAAGGGTTTGTTTGCAGGTACACAAATCCTTCTGTACAGGTGTGACGTGAGTGGGATGGGGAGCAAACTCTGCCTCGCCCCTTCCCCAGGACCCATGGAAACACACCAATACTGTCCCCATGTCCCTTGGGAGGACGTGTGTCAGTCCTTGGCATACTGACCACCTTGACTGCAGTACCGGGATTAGCAGTGGCAAAGTGATCTCTTTATAGGAAGGATAAACACTCCAGGGTCAGGGCTGAGGTATGTCAGCAGGGGATTACCCCCCAGAGCCCCCAGCTGGGTTAATGAGCTACATGGCAAAACGTGGGCAGGGATAATTTGGCACAGAAACGCCGCTCTGCAGCGCTGGCAGCCTCTTGTGTTGTGTTTGTTGCCTTTGGCTCCAAAGCCAAGTGCTCAGCTCACTATGGGCGCTCTTCTCCCCCCTGCAG
Seq C2 exon
GGTGTTGGCATGGCCAGCTCCCGGCCTCCCAAGTACCTCCTGGTCTTCGATTTTGATGAGACCATCATCAACGAGAACAGTGATGACTCCATCGTGCGGGCAGCACCAGGGCAGGCACTGCCTGAGCACATCCGGCAGAGCTTCCGCGAGGGCTTCTACAATGAGTACATGCAGCGCGTCCTGGCCTACATGGGGGACCAGGGCGTCAAGATGGGGGACTTCAAGGCTGTCTATGAGAACATTCCCCTGTCTCCGGGCATGCCTGACCTCTTCCAGTTCCTCTCCAAGAACCACGAGCTCTTCGAGATCATCCTCATCTCCGACGCCAACATGTTTGGCATTGAGTGCAAACTGAGGGCGGCCGGTTTTTACTCCCTCTTCCGCAAAATCTTCAGCAACCCGTCCAGCTTTGACAAGAGGGGTTACTTCACCTTGGGGCCCTACCACAGCCACAAGTGCCTTGACTGCCCAGCCAACATGTGCAAGCGCAAAATCCTAACGGAGTACCTGGCTGAGAGAGCGCAGGAAGAGGTGGAGTTCGAGAGGGTGTTTTACGTTGGGGATGGTGCCAATGACTTCTGCCCTTCGGTGACTTTGACTTCAGCTGACGTTGCTTTCCCTCGGAAGGGCTACCCCATGCACCAGATGACCCAGGAGATGGAGAAGAAGCAGCCTGGAACCTTCCAGGCCACCGTTGTTCCCTGGGAGTCGGCTACCGAGGTTGCCCGCTATCTGCAGGAGCTCCTCAAGAAGAAGTGCTGAGGATGGATGGCTCCAAAGAGGCTTGTTTACGATAAGCAGCTGGGAAGGGAGAAGGCTGGGAGATCACGTCCTGCAACCCATGTTTATTTGGCACTGCTCACTTGGACTTTGATTCCTGGACTGCTTTCCTGCCTTCCTCTCCAAGCTCCTATCTCCCCAGTGATCGAAGCACTTTCTCTCCCCCCACATCCCTTTCTCTTCCCTCTGCCACGTTGAGATGAAGTCTTCTCTATGCAGTTTAGATGGCTTCTCTGCTGTTGGTGGTTGGCAACACTAATGGTATGGGGTTGGTTTTTTTTTTTTCCCTTTTTGACTTCTCGAGAGCATTTCTTTACCATCCAGAAGCCAACTCTCCTGCAGGCTGAGCCCTGCATGTGCTTCCTCTTGACTTCATCCCTCTCAACCTCCTGCCCATCTCCACTCTCCATGCAGGAGCCGCATGCTGTTGCCTTCAACCCAATGCTCCAAGGGCTCCTTGCCTCTCCAGGAAGCCACATGAAATTTAGTCTGGGCAGTTTGTGCTGCCCAGGCTCCCCAGCTCGCCATGCACCCCACTCCTTGCTCAGCAGATGAGCCTCGCACAGGAGTTCATTGTCCCTTCAGACTTTATTTTCTGGGGAAAAAAAAAAAATAATGAAAAATCAAGGAAACCTTTTAAAGGTTGGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001281:ENSGALT00000001957:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=93.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGTGCTGTGAGGGTGTTG
R:
AGAGCTCGTGGTTCTTGGAGA
Band lengths:
342-1092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]