BtaALTA0022014-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000033 | PHOSPHO1
Description
phosphatase, orphan 1 [Source:HGNC Symbol;Acc:HGNC:16815]
Coordinates
chr19:37981737-37983706:+
Coord C1 exon
chr19:37981737-37981847
Coord A exon
chr19:37983485-37983605
Coord C2 exon
chr19:37983606-37983706
Length
121 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAGCCTTGGGTCCTCCTCAGGTC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GAGCCCTGGACCGACGGCTGGAGGCCAACAATCCCTACAGGTGGTGCTCGGGGTGATGTACTGACAATGAGCGGGTGTTTTCCAGTTGCTGGCCTCCGATGCCTGTCTAGG
Seq A exon
GTCTTCGATGTGCCAGCATCTCTGGCCGTGGCCCGCTAACCTGCCTCTCCTGGGCCGGCTCCTGCCGCGCCCCCTCTCGCTTGCTCCCTCCTCCTCCTGCTCCTCTCTCCCCTGCTCCCAG
Seq C2 exon
GACGGCGGGATGGCTGCGCAGGGCTCGCCGCGCTTCCTCCTGACCTTCGACTTTGATGAGACTATCGTGGACGAAAACAGCGACGACTCGATCGTGCGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000033-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCGACGGCTGGAG
R:
ATCGAGTCGTCGCTGTTTTCG
Band lengths:
198-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development