HsaALTA0006283-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis class C [Source:HGNC Symbol;Acc:HGNC:8960]
Coordinates
chr1:172442331-172444083:-
Coord C1 exon
chr1:172443988-172444083
Coord A exon
chr1:172442831-172442845
Coord C2 exon
chr1:172442331-172442830
Length
15 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CAACTTTCGTAGGTTCACAGTCT
3' ss Score
-0.89
Exon sequences
Seq C1 exon
GGAAGTGCTTGGCCACAGTCGCAGCCCCGGCGCCCCGAAGCGGGAAAAAGGCTGGGTGCCGCCGTCCCCCAGCTGCGCAACCCTAGGAACTCTCGG
Seq A exon
TCTCTCTTTTTCTAG
Seq C2 exon
GAACTTGGCTGTGTTGTCCTGCCTCAGAGACAAATTCATCTATTGTAGGCCTAGCCCCTGCCTTTGAAAACAAGGAAAGGTTGGTAGAACATCAACACAGCATGGAATTTCCAGGGAGGTCTCATTTCAAAACTTCATAAAGAACAAGAACCACCTGGACTTCTGTGAGGGCGATGATTAAACTGGCCTGAGTTTGAATGAAAGGATAATGTATGCTCAACCTGTGACTAACACCAAGGAGGTCAAGTGGCAGAAGGTCTTGTATGAGCGACAGCCCTTTCCTGATAACTATGTGGACCGGCGATTCCTGGAAGAGCTCCGGAAAAACATCCATGCTCGGAAATACCAATATTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATCCAGCAGCTGTGCAGTGTTTGTGTTTTTGTGGTTATCTGGTGGTATATGGATGAGGGTCTTCTGGCCCCCCATTGGCTTTTAGGGACTGGTCTGGCTTCTTCACTGATTGGGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845-0-3,0-2,0-1-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCTTGGCCACAGTC
R:
GCAGGACAACACAGCCAAGTT
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains