MmuALTA0013238-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026698 | Pigc
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
Coordinates
chr1:161969299-161970531:+
Coord C1 exon
chr1:161969299-161969369
Coord A exon
chr1:161970227-161970239
Coord C2 exon
chr1:161970240-161970531
Length
13 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAGCTTCCATATATTTACAGTTC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GCTGTGAGCGCTTCCGGCTGATCCAAGGCTGGGGCGGGGGTCGGCAGCGGCGGGCGGGGCAGGCCGGTTGG
Seq A exon
TTCTCTCTTCTAG
Seq C2 exon
GAATTTAGCTGTGTTGTCCTGACCCTCAGGACAAACTCATCTAATGCAGGCTCAGCTTGTACTGAAGGCTTTGTAAACAAGGAAAGTTCTGTAGGGTATCAGCATGGCATTTCCAGAGAGTTCTTAATCTACAGATTTATCAAGAACCAGAACCCCATGGACGTCCCTGAGGGAGATTGAGCCAACCTGGATTTGAGGAAAGAATGAGATAATGTGTGCTCAACGTGTAACAGACACCCCAGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCGTTCCCTGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026698-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCCGGCTGATCCAAG
R:
CTGAGGGTCAGGACAACACAG
Band lengths:
92-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types