MmuALTD0010329-1/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000026698 | Pigc
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
Coordinates
chr1:161969302-161972330:+
Coord C1 exon
chr1:161969302-161969369
Coord A exon
NA
Coord C2 exon
chr1:161970227-161972330
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CAGCTTCCATATATTTACAGTTC
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTGAGCGCTTCCGGCTGATCCAAGGCTGGGGCGGGGGTCGGCAGCGGCGGGCGGGGCAGGCCGGTTGG
Seq A exon
NA
Seq C2 exon
TTCTCTCTTCTAGGAATTTAGCTGTGTTGTCCTGACCCTCAGGACAAACTCATCTAATGCAGGCTCAGCTTGTACTGAAGGCTTTGTAAACAAGGAAAGTTCTGTAGGGTATCAGCATGGCATTTCCAGAGAGTTCTTAATCTACAGATTTATCAAGAACCAGAACCCCATGGACGTCCCTGAGGGAGATTGAGCCAACCTGGATTTGAGGAAAGAATGAGATAATGTGTGCTCAACGTGTAACAGACACCCCAGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCGTTCCCTGATAACTATGTTGACCAGAGGTTCCTGGAAGAACTCCGGAAAAACATCTATGCCCGGAAGTACCAGTACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAGCAGCTGTGCAGTGTCTGTGTTTTTGTAGTGATCTGGTGGTACATGGATGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACCGGACTGGCATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026698-2-2,3-2,4-2,5-2-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCCGGCTGATCCAAG
R:
CTCAATCTCCCTCAGGGACGT
Band lengths:
257-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types