Special

MmuALTA0013238-1/2 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000026698 | Pigc
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:MGI Symbol;Acc:MGI:1914542]
Coordinates
chr1:161969299-161970531:+
Coord C1 exon
chr1:161969299-161969369
Coord A exon
NA
Coord C2 exon
chr1:161970240-161970531
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTACAGTTCTCTCTTCTAGGAA
3' ss Score
10.96
Exon sequences
Seq C1 exon
GCTGTGAGCGCTTCCGGCTGATCCAAGGCTGGGGCGGGGGTCGGCAGCGGCGGGCGGGGCAGGCCGGTTGG
Seq A exon
NA
Seq C2 exon
GAATTTAGCTGTGTTGTCCTGACCCTCAGGACAAACTCATCTAATGCAGGCTCAGCTTGTACTGAAGGCTTTGTAAACAAGGAAAGTTCTGTAGGGTATCAGCATGGCATTTCCAGAGAGTTCTTAATCTACAGATTTATCAAGAACCAGAACCCCATGGACGTCCCTGAGGGAGATTGAGCCAACCTGGATTTGAGGAAAGAATGAGATAATGTGTGCTCAACGTGTAACAGACACCCCAGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCGTTCCCTGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026698-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF064326=GPI2=WD(100=90.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000107221





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028021





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000125321, ENSMUSP00000125562
          









    
Other Skipping Isoforms:
ENSMUSP00000141646
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr1:172442331-172442830 
HIGH PSI
HsaALTA0006283-1/3
(PIGC)
Human
(hg19)
chr1:172411892-172411970 
HIGH PSI
HsaALTA0006283-1/2
(PIGC)
Rat
(rn6)
chr13:79887925-79888420 
HIGH PSI
RnoALTA0029147-2/3
(Pigc)
Cow
(bosTau6)
chr16:40787332-40787333 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr20:14917751-14917752 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CGCTTCCGGCTGATCCAAG

				
R: 
CTGAGGGTCAGGACAACACAG

				
Band lengths: 
92-105

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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