RnoALTA0029147-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000026497 | Pigc
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:RGD Symbol;Acc:1311337]
Coordinates
chr13:79886832-79888420:+
Coord C1 exon
chr13:79886832-79887009
Coord A exon
chr13:79887925-79887973
Coord C2 exon
chr13:79887974-79888420
Length
49 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
ACAGTTCTCTCTTTTTCTAGGAA
3' ss Score
11.38
Exon sequences
Seq C1 exon
CACAGTAGTCCCCTCCAACCCCGCGTCCCGGATGTAGAAGTAGCAGGGCTGCTGCTCTTCTCGGTCGTACACCCCCTAAAGAGCTGGGGCAGGTGGGTTCCGGCGTCCTTCGCTTCGGGCCTTTCCGGCTGAGCCAAGGCTGGGAGAGGGGCGGCGGCGGGCAGGGCAGGCCGGCTTG
Seq A exon
GAATTTAGTTGCGTTGTCCTGATTCACGGAACAAACTCATCTATTGCAG
Seq C2 exon
GCTTAGCCTGGCCCGAAGACTTTGTAAACAAGGAAAGTTCTGTATGCTATCAGCGTGGCATTTCTGAGAGGTCTTAATCTACAACTTTATCAAGAACTAGAATCCTGTGGGCATCTTTGAGGGAGATTGAGCCCGCCTGGATTTCAGGAAAGGATGAGATAATGTGTGCTCAACATGTAGCGGACACCTCCGAAGTCAAGTGGCAGAAGGTTTTATATGAGCGGCAGCCATTCCCTGATAACTATGTTGACCAAAGGTTCCTGGAGGAGCTCCGGAAAAACATCTATGCCCGGAAATACCAATACTGGGCTGTGGTATTTGAGTCCAGTGTGGTGATACAACAGCTGTGCAGTGTCTGTGTCTTTGTAGTCATTTGGTGGTACATGGACGAGGGTCTTCTGGCTCCCCAGTGGCTTTTTGGGACTGGACTGGCATCGTCCTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026497-1-2,1-1,1-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACCCCCTAAAGAGCTGGG
R:
TTACAAAGTCTTCGGGCCAGG
Band lengths:
138-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]