HsaALTA0006283-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000135845 | PIGC
Description
phosphatidylinositol glycan anchor biosynthesis, class C [Source:HGNC Symbol;Acc:8960]
Coordinates
chr1:172411892-172413223:-
Coord C1 exon
chr1:172413128-172413223
Coord A exon
NA
Coord C2 exon
chr1:172411892-172411970
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CACAGTCTCTCTTTTTCTAGGAA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GGAAGTGCTTGGCCACAGTCGCAGCCCCGGCGCCCCGAAGCGGGAAAAAGGCTGGGTGCCGCCGTCCCCCAGCTGCGCAACCCTAGGAACTCTCGG
Seq A exon
NA
Seq C2 exon
GAACTTGGCTGTGTTGTCCTGCCTCAGAGACAAATTCATCTATTGTAGGCCTAGCCCCTGCCTTTGAAAACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135845-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF064326=GPI2=WD(100=90.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGCTTGGCCACAGTC
R:
GCAGGACAACACAGCCAAGTT
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)