HsaALTA0006730-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817801-2818969:+
Coord C1 exon
chr16:2817801-2817966
Coord A exon
chr16:2818683-2818758
Coord C2 exon
chr16:2818759-2818969
Length
76 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTCTCTTCTGCCAGCTATAGTGA
3' ss Score
-0.64
Exon sequences
Seq C1 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
Seq A exon
TGACCTTAGTGATCCCTCCGGGTGGATGGTCCAGTTTGGCCAGCTGACTTCCATGCCATCCTTCTGGAGCCTGCAG
Seq C2 exon
GCCTACTACACCCGTTACTTCGTATCGAATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTATGACATTGCCTTGGTGAAGCTGTCTGCACCTGTCACCTACACTAAACACATCCAGCCCATCTGTCTCCAGGCCTCCACATTTGAGTTTGAGAACCGGACAGACTGCTGGGTGACTGGCTGGGGGTACATCAAAGAGGATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-4-8,4-7,4-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=78.6)
A:
NA
C2:
PF0008921=Trypsin=FE(42.8=100)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCACGTATGCGGAGTG
R:
TGTAGGTGACAGGTGCAGACA
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains