HsaEX6041916 @ hg38
Exon Skipping
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2817801-2826304:+
Coord C1 exon
chr16:2817801-2817966
Coord A exon
chr16:2820955-2821109
Coord C2 exon
chr16:2825970-2826304
Length
155 bp
Sequences
Splice sites
3' ss Seq
TCCCACTATCGTCCGCACAGCAC
3' ss Score
6.19
5' ss Seq
TTCGTGAGT
5' ss Score
7.9
Exon sequences
Seq C1 exon
GACCATGCGGCCGACGGGTCATCACGTCGCGCATCGTGGGTGGAGAGGACGCCGAACTCGGGCGTTGGCCGTGGCAGGGGAGCCTGCGCCTGTGGGATTCCCACGTATGCGGAGTGAGCCTGCTCAGCCACCGCTGGGCACTCACGGCGGCGCACTGCTTTGAAAC
Seq A exon
CACTGCCATCTCCCCACACCCTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATGGTTTGTGCTGGCAATGCCCAAGGCGGGAAGGATGCCTGCTTC
Seq C2 exon
ATAAGAGGACACAGTGAGAAGATGGGGGTCTGCTCGCCAGGAAGGAGCCCTCACCAGCAGCCGCATCGCTCAGCACCTTGATCCTGGACTTCCAGCCTCCAGAGCTGTGAGAAACAAACCTCTATCATCTACCAGCCGCCCACGGCGTGGGATTTGTGTTACAGCAGCCTGAGCTGACCCAGACGCCAAGGAGCAACACACGCACCAGGGTAGGCTGGAGAAACCAGAACCCGGGAATCCCGCCTCCCTCAACTTGAAACTTGGGAATAGTGTATTCTCTTTTCAACACTTGCACTAGTAGAAGGTTAATTACATGAAAGATTAGGCAAAATGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=78.6)
A:
PF0008921=Trypsin=FE(21.2=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCCCACGTATGCGGAGTG
R:
GCTCAGGCTGCTGTAACACAA
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains