HsaALTD0005087-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2820981-2821719:+
Coord C1 exon
chr16:2820981-2821067
Coord A exon
NA
Coord C2 exon
chr16:2821366-2821719
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
3' ss Seq
TCAGCCCCGCTGCTCCCCAGGGT
3' ss Score
5.3
Exon sequences
Seq C1 exon
GAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATG
Seq A exon
NA
Seq C2 exon
GGTGACTCAGGTGGACCCTTGGCCTGTAACAAGAATGGACTGTGGTATCAGATTGGAGTCGTGAGCTGGGGAGTGGGCTGTGGTCGGCCCAATCGGCCCGGTGTCTACACCAATATCAGCCACCACTTTGAGTGGATCCAGAAGCTGATGGCCCAGAGTGGCATGTCCCAGCCAGACCCCTCCTGGCCGCTACTCTTTTTCCCTCTTCTCTGGGCTCTCCCACTCCTGGGGCCGGTCTGAGCCTACCTGAGCCCATGCAGCCTGGGGCCACTGCCAAGTCAGGCCCTGGTTCTCTTCTGTCTTGTTTGGTAATAAACACATTCCAGTTGATGCCTTGCAGGGCATTCTTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038-10-17,11-17-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=56.2)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCTATGTGCAACCACCT
R:
CCAGCTCACGACTCCAATCTG
Band lengths:
134-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development