HsaINT1028198 @ hg38
Intron Retention
Gene
ENSG00000007038 | PRSS21
Description
protease, serine 21 [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr16:2818677-2821109:+
Coord C1 exon
chr16:2818677-2818969
Coord A exon
chr16:2818970-2820954
Coord C2 exon
chr16:2820955-2821109
Length
1985 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TCCCACTATCGTCCGCACAGCAC
3' ss Score
6.19
Exon sequences
Seq C1 exon
CTATAGTGACCTTAGTGATCCCTCCGGGTGGATGGTCCAGTTTGGCCAGCTGACTTCCATGCCATCCTTCTGGAGCCTGCAGGCCTACTACACCCGTTACTTCGTATCGAATATCTATCTGAGCCCTCGCTACCTGGGGAATTCACCCTATGACATTGCCTTGGTGAAGCTGTCTGCACCTGTCACCTACACTAAACACATCCAGCCCATCTGTCTCCAGGCCTCCACATTTGAGTTTGAGAACCGGACAGACTGCTGGGTGACTGGCTGGGGGTACATCAAAGAGGATGAGG
Seq A exon
GTGAGGCTGGGGACAGGCGGGTCAGGGAGGAACTGTCTTTGTTCACCTGTTCCCCTGCATAGGCACAATAGCCCCCTGCTTGGTCTGGGGGTGCAGGCTATGCCCCTCTTGCTTGCAGTCTCTCCTCACCTGCCAGGGCAGGGACCAAACACCCAGTTCTCTCCCTTCCAGGGGCTGTGGGGGCCAGAAGGAGAGTGTGAGAGGGAGGCCAGTTTGGCGCAGGCCTGTGGGTGGTGCGGTGGTGGAGGGGTTCTGGAGGGCTTGGCGACATAAACCTCATACTTGGATTTATTCCTGCATCTTTCCACCTCCCCCAGTGCTCACCAATGCCCCAGGCATCAGGCTCCTGGGCTGCCTCTCCATGCCTCCCACACCCACCCTAGCTCTGGCCGATTCTCCTGCAGCACTGAGCCCATTCCTCTCCCCAGAAACTTCCAAGCCATGCTCAACCGCAGCTCCCACGGAAACCCCTCTGGGGGTTCCTCTGGTGGGCCTGCCCTGGCACCTGCGTGTCCCCCAACACACATGCCCTGAAAGAAGTGGGCCCAGCATCCGGAGGAGCCCCGGCAGCCCCAGACTGGGCGTGTTCCCTGTATCAGGAATCCCTTCCCTCTGCTCCCCTGTCTGGCCCGTCCCTGCATCATCCCACAACAGTAGTAACAATAACAAACGTGGTTCCTTGAGCACACGCTGTGTGCCTGGCACTGTTCTAGACATGGGGGCCCAGCAGTGAGCCAGGCGCGGCCTCTCCTCCTGCTGGAGCTCACCTAGGAATGAAGTTGGTAACGTTCTTATACCCATCTTACAGATGAGAAAACTGAGAGGGTTATGGAAATTGCCAAGAACTAGTAAATGGAGAAGTCAGGGCCCCTTGCCTTAGAGAGGGTAAGGGATGTCCCCAAGTCACACCCCGGCAGTTGGGAGTGGGGAACTCAGCACTGGAGCCGCCTCCCTCTGGAGGAGGGATCCTTTGCCTTCCCTGAGAAGGACCCTTGCTGCAAACACGAGTGGATATGAGCCAGGGGCACGGCCAGGCTGCCTCTGCCACCCTCTCTCCCCAGCCCAGGGTAGACAGGTCACACCAACCCCAGGCTGTGCCTCAATTCACAGTGCCGGGGAGGCAGGGGACAGGCACTTCTGGAGCCCCCTGCCTGGTGTGCACCTTTGCTGTGCCCTGCGCGGGCTGGGAGGCCTTGGGCAAAGGTGTTCATCTTACAGTGCCTCAGTTTCCTCCCCTGTGAAATAGGGGAATGATGGTGCCACATCAGAGGCTAGTTCCCAGGTTGTTAGTCCCGAGGGCTTAGGAGAGGCCCCGCTGACGGGAAGCGCTGCCTGCAGGTTGGGTCTCATTGTCTTTTGTCATCCTCTGCAGGACAAGGTGCTGGCTGGCACTCTGAGGCAGGAATTGGACAGGTGTGGGCTCCTGTCAGGCTCTGAAACTTCCCCAGTGCCTTGCTGGGGGTCAGCGGGGCAATATCCCCCTGACTCTCCTTATCTGGGAGTAGGTCCTGATGACTGCCGCCTCCCAGGGGTGCTGGGGGTCCCTAAGAGTGCTGCAACAAGCTTGTGTCCAGGCCTGGAAAGCGCCCAGCTGCTACTGAGGCCAGGGCTGCAGCCAGGCTGCCCCTCCCCCAGGTCTGGCTTTGGATGCTCATCTGAACACCGTCTCAGCTGCCTTCGCCCCTCCCTCGGCTCCTTTTGGCTGAGGAATCTCTCCATGGCTGCAGGCAGGGCCATTGTTGCCATTCTACAGATAGGGAAAGTGCGGCTGGGGGAGCTCTGACAGCCTGTCCCTCCCCGGGGCCTTCTGTGATGCTGCTGAGGGCCTCTGTTGTGCTGGGGTCTGGGTTGGAGCTGGGGGTAATGGAGATGAACCTGCCAGGCACAGTGGGTGCCCCAGGGCCCCCACCCCCGCAGCCTATGCCATCCCTCCATAGAGGGGCCTCAGGTTGCTGTCTCTCTCCTTCCCACTATCGTCCGCACAG
Seq C2 exon
CACTGCCATCTCCCCACACCCTCCAGGAAGTTCAGGTCGCCATCATAAACAACTCTATGTGCAACCACCTCTTCCTCAAGTACAGTTTCCGCAAGGACATCTTTGGAGACATGGTTTGTGCTGGCAATGCCCAAGGCGGGAAGGATGCCTGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007038:ENST00000005995:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(40.8=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCCTACTACACCCGTTA
R:
TTGCCAGCACAAACCATGTCT
Band lengths:
342-2327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains