MmuINT0127503 @ mm9
Intron Retention
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23974458-23979492:-
Coord C1 exon
chr17:23979212-23979492
Coord A exon
chr17:23974616-23979211
Coord C2 exon
chr17:23974458-23974615
Length
4596 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGA
5' ss Score
1.44
3' ss Seq
CTGTATCTTCCTACCCCCAGAGC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
Seq A exon
GTGAGATTAGCAACGCAGGGTGGGCATGTGGGTGTGCTATCTGTCCCCTGTTTCAGCCACAGCAGGCCCTGAAACCCTTCTCTGGCTCTGGAGCTCCAAGAGCCTCCTGCCTTCCTGCTCAGCCCCCACCCCCATTGCTTCCCACCTGCATGGAGCTGCCTTCTGTTCTGGAGCAGGGGTAGGCCAATGGCCAGAGATGCAGGAAGGGACTCAGCCAGGCTTGCATTCCTCAGCCAGAATGGGTGCTTAAGACCTTCTGAGGACAGTCTCTTTGACACTGATTTAATTTACAAGCCCTAAAGTATGAACATGAGCAGTGTTGAAATCACACATTTTAACACCAGTGAAACTGTCACCATTATCATGCCTCTAAGTCCTCACTAGGTGACACTTTAGCCTTCAAGATCAGGCGTGTTCAGAGTGGTGAGGTCATAGGCTGTCACCTCTGTCTAAGTGCAACATTTTCATCATTTCAAAAAGAAAACCTGCCAGCCTGGTCTACAGAGCAAGTTCCAGGATTACATAAATAAAAACCCTGTCTTGGAAAACAAAAAGCAAAAACCTCAGTGGGCATTGTGGTATAAGACCAGCCCTTGGGAAGGGAAGCCAGGAAGGTCAGGAGTTCATGTCTAATCCTATGCTCAATATCCTGGACTCCATAGCAAGTTTGAGACCAGCCTGGGCTGTCTAAAACAAACAAACACAAAACAAAACAAGAAAACTTCATACCCCTCCGCCATTTCTCTCAATCTCCTCATGTCCCTAGGACCTGTAGCCCTTGGCAGCCCAGACCTGCTTTCAGGCTCTTAGCTGCCTCTGGAAATGCTACACAAGTAGTCAGAGAAAAATGGTCGGGATTCTTAAATGTAATGTACTGTCCTCAATGTTGCCCCTTGTGGCAGTAGTGGGAACTGCTTCTCTCTAAGTTGTACTTCACATACCATTAAGGAACCATACAAAGAGTGTGCTCCAACCCCATTTAGTGTGTTGACAATACTGTTCAACTAGGGACCTTCATTCCCACCCGGCCTTTACTCCTCATGAGTCCCTCCCTACAGCCCCTGATAACCACAACCCAGCTTTCTGAGCACGGAACCATTGTTTTCTGCCCATAAGTGAAATACAGTTTGTGGTCCTATGGGTCTGGCTTCGTTCACATACCAGCCCAACTTAAAGATTCATCCTTTCTCCTTTCCAGTTTGGATGCCTTTAACTCTTCCTCTGAAAGGGGATATTCATTACTCTGAGTGCACATGTGTTGTGTATTTGGTATGTGTTGTATGGCATGTGTGTTGTGTGTATATGTGTTTTATGTGTGTGTGTATTATGTGTGTGCATTTGTGCTATATGTGTTATGCGTATATATGTGGTGTGTGTATGTGTGGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAACAATTTACAAAAGGAGTTGGTTCTCTTCTTCCATTATGTGGCCTGGGGATTGAACTTGGGCCATCAGGCTATGTCTCTGACCACTAGGCCGTCTCACCAGTCCTTATTTCTCTTTCTTACCTAATTTCTCTGCCTAGACCTTCCAGGATATCATGCACAAAAAGGAGAGGTACCCACCTCATTATTACTCTGGAGCAAGAGCTTTTTGTTTTTCCACCATTGAGCACAATGTAGCTTTGTGGAGGTAGTTGCCTTTGGATCCTAGCTGGCTTAGTGCTTTTATGAAAGAGCAGGGAAGTTTTGGGTTTTGGAGGTGGGGTGGGAGGGAATATGTGCATCTTCATGTGTATGTGCACGTCCAGGCCCGTGAGTATTCCAAGCATGTGTGCACATGTGTAGAGAGGTCAGAGGTCAACCTTGTGCATCTTCCTCAAATGCTCTTCATCTCAGTTTTCATGCATGTATAAATAAATTATGCACACATAAAACATGCATATATAAAAACACATATAGTTTTAAATTTTACTTATTTGGGGGAGGAGTGCATTCATACGACAGCATGCTTGTGGGGGTTGGAGGACAAGTAGCAAGAACCAGTTCTCTCCTGTTACCATGTGGGCTCTGGAAATAGAACCCAGGTCATCAGGCTCAGCAGTAAATGCCTTTGCCAGATGAGCCATCTCAATGGCCCCACATTGGCTTTGGTTTGGTTTTGTGTTTAAAGATATATTTATTTTATATATGCAAGTACACTGTTGCTATCTTCAGACACATCAGAAAAGGGCACCGGATCCCATTACAAATGTCTGTGAGCCACCATATGGTTGCTGAGAATTGAACTCAGGACCTCTGGAAGAGCAATCAGGGCTCTTAACCAACCGCTGAGCCATCTCTCCAGCCCCTGGTTTTGTTTTGCTTTGTTTTTGAGTCAGGGTCTCTCTGTACCATGAGCCCACCAGCATTGCTAGGCTGCCTGCCTGTGAGCCAGACCCTCCTGTCCCCAGTCCCAGCACTTGGGTCGCAGGCCACGCCACCGTACCTGGCTATCAAATTTTGCTTTGTTATATGAAAGACATTTGATCAAATGTTTTCTCTGCACTGATGGAGACTGTCTTTTCTCTTGCTAACATGTCTCTGCTGTGCTGATTTCCCATGCAGGACCCTCCTGTACCCTTGTGGGACCCTTGTGGCTGCTCATGGATCACAGCCCTTTCCTGCGCTGAGGGCCTCATTGCTGCATGCTGTGATATTTTTTTATTACTTACTTATTTCTTTTTTGTTGAGATAGGTTCTCTAAATAGCCCTGCGTGTCCTGGAACTCACTATGTAGACCAGGCTGGCCTTAAACTCAGAGATCCACCTGCCTCTACCTCTCTAGTACTGGGTAGGATTTAAGGCGTGCACCACCACCCGGCTTTAGGATATTTATGAGTGGTCCCGAGTTTTGGGTTTCTATTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGTTGGGATTAAAGGCGTGTGCCACCATGCCTAGCTGAGTTTTGGGTTTCTTTTGGCTTTTATGTTTGTCTAGCTTCAGCCCTTGGGTCTCACTGGCCAAGTGTGTAAATCAGGAAGTGTTTCTCTGGCCTGTAGTTAGGGAGAGTACAGGAAGGATCCCAGATCTTTTTTCTTTACACATTGATAGAATTTAACAGTGACACACCCAGGCACTTCTCCTTGGTTGGGAAACCTTGATGGCTGATTTTATCTCTTTGTTTATTGTGGCTCTATCTTGAGTCTGTTTAACAGTGTATGAGATTCCTGGGATTTTTCTGTGCCACCTTGGCAGGCAAGCTATCTAATTCGTTGGTGTACAGCTCTCATCCAGATTCCCTTGTTGTCCTTTTGGTTTTTGTCTTTGCTGCTGTTCTTATGAAGTAGAGCTGGGTTACAATATTGTAATATACATGATAGGCATGATGGGTAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAGTTGCAGCAACCTCATGGTGGCTCATAACCATCTGCAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGAGAGTGACAGTGTAATCATAAACATAAACATGTTTATAAACATCCTATTGGCCCTGGCAATATTTCTTGAATTTCATCTTATTTTATTTTGTGTGTGTATATACCTGGGTATGTGTGTGTGTGTGCACATGTGTGCATATGTGTGCTCACCTGAGTGAGGGTGTGTGTGTACCCAAGTGCCTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGCGCGCGCGCGCGTGCATGTATGCGTGCACGTGCACATCATATCAGAAGAAACACCAGACCAATGGAAATAGTTACAGACAACTGTGAGTCTTCATGTGGGTTCTGGGGACTAAACCTGGGTCCTTTGCAAGGGCAGTAAGTGCTCTTATCAGTTTTCCAGTCCCAACCCTGAGAGCATTTTAAAGACTATGTTTTTCTTTGTAGTCTAGGCTGTCCTCAAACTCACAGTCCTGTCACCTCCATGCTGAGAGTTCAGGCATGCACCTCCAAGCTGGTGAACTCGGGAGTCTCCATCTTGGGATCCTGTGTGCCCAAACTATCTCAGCACCCCAACCCCTCCCGCCTATGCTCCAGCAAAGGTCTCCCTCCACTGCCACACTCAGGGGCTAGCCCTTCCAGAGCAGACATGGAGGAACTGGGGCACTCAGGGAACTTCAACACTTACCTCCACGCTGGTTCTTTCTGTCATACTGGACTGTCCGTGGTGTGGGGTGATCAGCAGGGGACACCACCCTTATGTAAGAGGTGTACTCTTGCCCTTAAGAGTAGAGGAGGTCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAATAAATAAATCTTTAAAAAAAAGAGTAGAGGAGACCTCAATACTGTGCTCTGTATCTTCCTACCCCCAG
Seq C2 exon
AGCCTCTGCCACCGCCCTATCACCTTCGAGAAGTACAGGTCAGCATCCTAAACAACAGCAGGTGCCAGGAGCTGTTCGAGATTTTCTCCCTACACCACTTGATCACCAAGGATGTGTTCTGTGCTGGCGCTGAGGATGGGAGCGCAGACACCTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-Prss41:NM_027644:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(47.9=95.8)
A:
NA
C2:
PF0008921=Trypsin=FE(21.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: