MmuEX6075551 @ mm9
Exon Skipping
Gene
ENSMUSG00000024114 | Prss41
Description
protease, serine, 41 [Source:MGI Symbol;Acc:MGI:1918253]
Coordinates
chr17:23973752-23979492:-
Coord C1 exon
chr17:23979212-23979492
Coord A exon
chr17:23974458-23974615
Coord C2 exon
chr17:23973752-23974115
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTATCTTCCTACCCCCAGAGC
3' ss Score
10.23
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTACCTTGATCCAGAAAAGTGGACCGTCCAGCTTGGGCAGCTTACATCCAAGCCGTCTTACTGGAACAGGAAGGCCTATTCTGGACGGTACAGGGTAAAGGACATCATCGTAAACTCCGAAGACAAGCTGAAGTCCCATGACCTGGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGGACATCCAGCCTGTCTGTGTGCAGCCTTCCACCTTTACGTCCCAGCACCAGCCCAGGTGCTGGGTGACCGGCTGGGGAGTCCTTCAGGAGGATTTGA
Seq A exon
AGCCTCTGCCACCGCCCTATCACCTTCGAGAAGTACAGGTCAGCATCCTAAACAACAGCAGGTGCCAGGAGCTGTTCGAGATTTTCTCCCTACACCACTTGATCACCAAGGATGTGTTCTGTGCTGGCGCTGAGGATGGGAGCGCAGACACCTGCAGT
Seq C2 exon
GGTGACTCAGGAGGACCCTTGGTCTGCAACATGGATGGTCTCTGGTATCAGATCGGAATTGTGAGCTGGGGAATAGGCTGTGGGCGACCCAACCTGCCTGGCATCTACACCAACGTCAGCCATTATTACAACTGGATCGAGACCATGATGATCCTCAATGGTGCAGTCAGGCGTGATCTGGCCCTGCCACTGCTGTCTATCACTCTGCTTCAGGCTCCCTGGCTCCTGAGGCCCACCTGAGCTCATGAGGCTGCAGCTTTGCACTCTCTGCAGCCCCAGGACAGTCCATATACTGTAGGGATAGCTTGCTTCACCAGGCTCTTGTCTTGTCTTCTTTGCCAATAAACTCATTGTGCATATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024114-'7-6,'7-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(47.9=95.8)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=PD(19.0=56.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAAGACAAGCTGAAGTCCC
R:
AGCCTATTCCCCAGCTCACAA
Band lengths:
244-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: