RnoEX6046334 @ rn6
Exon Skipping
Gene
ENSRNOG00000033690 | Prss41
Description
serine protease 41 [Source:RGD Symbol;Acc:1584711]
Coordinates
chr10:13179781-13186038:-
Coord C1 exon
chr10:13185758-13186038
Coord A exon
chr10:13180499-13180656
Coord C2 exon
chr10:13179781-13180161
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCTCCCTGCCCCAAGAGC
3' ss Score
7.7
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTTCCTTGATCCAAAAAAGTGGACGGTCCAGCTTGGGCAGCTGACCTCCAAGCCTTCTTTCTGGAACAGGGAGGCCTTCTCTGGCCGGTACAGGGTAAAGGACATCATCATAAACTCCGAAGACAAACTGAAGTACCATGACCTCGCCCTGCTGAGGCTGGCCTCCTCGGTCACCTACAACAAGTTCATCCAGCCTGTCTGTGTGCTGCCTTCCGCCTCCATGTCCCAGCACCAGCCCCGGTGCTGGGTGACCGGCTGGGGAGCCCTCCAGGAGGATTTGA
Seq A exon
AGCCCCTGCCACCGCCCTATCACCTCCGAGAAGTACAGGTTACCGTCCTAAACCTCAGCAGATGCCAGGAACTCTTCAGCTTTGCCTCCCGATACCACTTGATCACCAGGGATGTGTTCTGTGCCGGTGCGGAGGATGGGAGCGCCGACACCTGCAGT
Seq C2 exon
GGTGACTCAGGAGGACCTTTGGTCTGCAACATGGATGGTCTGTGGTATCAGATTGGAATCGTGAGCCGGGGAGTAGGCTGTGGGCGGCCCAAACTGCCTGGCATCTACACCAACGTCAGCCATCACTACGACTGGATTAAGACCATGATGATCCTCAATGGTGCAGTCAGGCATGACCTGGCCCTGCCATTGCTGTTCTTCACTCCACTCCAGGCTCCCTGGCTCCTGAGGCCCACCTGAGCCCATGAGGCTGCAGCTTTGGGCCTAAAGCACCATTGCACTCTCTGCAGCCCCAGGACATTGAGTCTAGGGTAGGGATGTCCTGCTTCCCCAAGCTCTTGTCTTGTCTTCTTTGCCAATAAACTCGTTGTGCATATCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033690-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=PD(19.0=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCGGTCACCTACAACA
R:
CAGTCGTAGTGATGGCTGACG
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]