HsaALTA0006977-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135985013-135985876:-
Coord C1 exon
chr9:135985683-135985876
Coord A exon
chr9:135985073-135985108
Coord C2 exon
chr9:135985013-135985072
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACACTAGACGTCATAAGCAGGTA
3' ss Score
-0.26
Exon sequences
Seq C1 exon
TATGAGAATGAGTCGGCCCTGAACCTTTATGAGACTTGCAAGGTGCGGACCGTGAAGGCTGGCACGCTGGAGAAGCTGGTGGAGCACCTGGTGCCAGCCTTCCAGGGCAGCGACCTCTCCTACGTCACCATCTTCCTGTGTACCTATAGAGCCTTCACCACCACCCAACAGGTCCTGGACCTGCTGTTCAAAAG
Seq A exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAG
Seq C2 exon
ATACGGCTGCATCCTCCCCTATTCCGACGAGGATGGTGGACCCCAGGACCAACTTAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(47.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=FE(19.8=100)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCTCTCCTACGTCACCAT
R:
TCGTCGGAATAGGGGAGGATG
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)