MmuALTA0014810-3/7 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026821 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:MGI Symbol;Acc:MGI:107485]
Coordinates
chr2:28542290-28542902:+
Coord C1 exon
chr2:28542290-28542483
Coord A exon
chr2:28542855-28542890
Coord C2 exon
chr2:28542891-28542902
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACACTAGACATCATAAGCAGGTA
3' ss Score
-0.5
Exon sequences
Seq C1 exon
TGTGAGAACGAGTCGGCTCTGAACCTCTATGAGACCTGCAAGGTGCGCACGGTGAAGGCTGGTACTCTGGAGAAGCTGGTGGAACACCTGGTGCCTGCCTTCCAGGGCAGTGACCTTTCCTACGTCACTGTCTTCCTGTGCACCTACAGAGCCTTCACTACCACCCAGCAGGTGCTAGACCTGCTGTTCAAAAG
Seq A exon
GTACGGTAGATGTGACGCCCTCACGGCCTCCTCTAG
Seq C2 exon
ATATGGCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026821-13-15,13-14,13-13,13-12,13-11,13-10,13-9-3/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PU(42.5=73.8)
A:
NA
C2:
PF0061815=RasGEF_N=PD(26.9=85.7)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types