HsaALTA0007008-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178423582-178426034:+
Coord C1 exon
chr1:178423582-178423783
Coord A exon
NA
Coord C2 exon
chr1:178425856-178426034
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTGAAAATTCCTTCCTACAGGCG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GTTTGGTAACAAAGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTGTGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
NA
Seq C2 exon
GCGACCGTGGCAAAATTGGGGCCTCTCCCTCGTGTTCTTGCTGATATTACCAAGTCATTGACTAATCCTACGCCAATACAACAGCAACTGAGACGCTTCACTGAACATAACTCCAGTCCAAATGTCAGTGGAAGCCTCTCCTCTGGGCTGCAGAAAATATTTGAAGACCCCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-20-23,20-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.4=78.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCGAGAGCTTTCAGTTTT
R:
TCAGCAAGAACACGAGGGAGA
Band lengths:
105-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)