HsaINT0137700 @ hg19
Intron Retention
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178423582-178426034:+
Coord C1 exon
chr1:178423582-178423783
Coord A exon
chr1:178423784-178425834
Coord C2 exon
chr1:178425835-178426034
Length
2051 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTATTATCCAATTAGGGT
3' ss Score
6.92
Exon sequences
Seq C1 exon
GTTTGGTAACAAAGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTGTGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
GTAAAGTAGGTTGGTGGAAGATAGAGAACTTTAATGTACCTGAATTCTGGAAAGTAACTATAGAGTGATAGCACTCACTCTTTCTGCTAATTGAAAGCAACTGTTTACCCTAGAAATCTGAGAGTAAATGGTCATCATTTCTGAGTAAAATATGAGATCGACAACCATGAAACTCTAGAAAACCATGACATTATTAATATATGTTTTTAATAATTATCTGAATTAATGGAGTATATTTCTCTAAATTTATATATACAGAGTGCATATCTGAAAACTTGACTAGAAACTAATATATTGGTATATACAGCCTTATGCATGTCTAATAGGATAAGATGAAACCTCATATAGTAATTTCTAATAAAAGTATAGATTTAGCTAAGAAAATACTAGGTTTATCATGTTTTAAGTAACTACCCATGAAACAAATTTTTTTACTATACAAGTCATAGAGTTTCATATAATTATTAGTGCTAACAGTCATTGTTTTCTTTCTTTACAGATGTGAATTAAGAATACAGAAAGCAATTATTTTTAATCGTTTGCTAAGAATTTTATTATATACCGTATTAATAAGTAAATATACACCATGCCAATCATTTTCTTCCTTCTGGAATTTAACAAAAAGGAATAGATTTGGTAGTAAAAAATAGTCTAAAAGACGTTGGCTAGGCTTATTACAATAATTATTTATTGATGTTTTTGTTTGCTACAGGCACTTTATAAATATGTGTGGTGGTATGTTAGAATAACTTCAAAAGACAGTCATTTTTCTATGATAATGATCTACTTATTTTCCTCTATTTTCCTATCAATAAAAATGCTATATCAGTAAAATTTGAAGGGGAATAAAACCTATTAACAAAGACCACTTTGCTGAGGAAACATATGTGGTAATGTGTCCTCCAGTGCTTAAAATATTTGTAAAACAATAAACTGTTCCTTATTCTCGAGGACCTTTTCTTCACTTTTAGAAATGCTAGCTAGATTTTTAAGTTGCAGCTATGCCAAAGATAAACCCTTTTCATGTGAATCGTAGCCCAACATTATTGAGCAAGTAAAGGCCTTGGTGGCATCTATCCCTGTTTGAGTAGGGTAGAAGAGTCTGTTGATTGTTGAGAAGGCAAAGACCCAAAGGCAGCTATGCCAAACTGACTGACAGTTGAAGGGGACCCCTAAGACCCCATGAGAATAAGAATTCCCTAAATAAAAAAATGATTGAAATGGATAAAGCAAGTATTAAAGAGTTCGTCTTTGTTGAATAACTGCATCTCAGTGGAATGCAGATTCAGTTTTCCTGTGAAATGGGCCTGGTTTATTCAGGATCAAAGTCTTTTTAACGGGCTTTGCTATGTAAACACACTTTCTCCTTTTTAATCTGTGTTTGGTCCTGGGAACCAGGAATACATCTAGACATATCTCATAGAGGAAGTTTACCTGATTTTGCTGTTAAATTAACAATAAAAATTGTCTTACTGATGGAAACTCAGTTGGCAGTGGGTCAGGGTTCCCAAGATTGACTGGGATAGTGGATGGCAGTATCATCTGTGTGCCCTGCAGTACTCTGGATTCCTGAATGAGCACCTTCTTATATGTTGGCATGCATTTCTTTTCTCACATGATCCCTTTTCTTTGAAAGTTTATCATACTAGTTGATCCTCTGATCTTGAAGTTCTTTTGGTTAGAAGGAATTTGGTTCTGCCTCCACCCTCCCCCACCTTGATCTACTAGCCTCCCAAAGATTTAGTTTGCTTCGCATGCCTATTTTAGTTGGAATGGCATTAGTTTGGTAGTTTTGAGCATGTCTTTTAATTTTTACTTGCATAATCCTGATTTCGATTTCCTTTCTTTCCTCGATGTCTGCCGCACCTTGTTTCGCCTCCTCCATTCATCTCGACGCCATGGTTCTGCTGCTCCATAACAATGCATTATGAACCTGCCACTCCCATATGCAAACACTTACCCTTCCCTCCAACCTACACCCCTCCATCAATGGCCATCGTTGTGCCAAAAACAATCTGTGGTGGATGTCGCAATGCTTATTATCCAATTAG
Seq C2 exon
GGTGAAAATTCCTTCCTACAGGCGACCGTGGCAAAATTGGGGCCTCTCCCTCGTGTTCTTGCTGATATTACCAAGTCATTGACTAATCCTACGCCAATACAACAGCAACTGAGACGCTTCACTGAACATAACTCCAGTCCAAATGTCAGTGGAAGCCTCTCCTCTGGGCTGCAGAAAATATTTGAAGACCCCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-RASAL2:NM_004841:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.402
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.5=68.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)