DreINT0124794 @ danRer10
Intron Retention
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35857140-35859649:+
Coord C1 exon
chr2:35857140-35857341
Coord A exon
chr2:35857342-35859470
Coord C2 exon
chr2:35859471-35859649
Length
2129 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
GTGACAATTCCTTCCTGCAGGCG
3' ss Score
8.94
Exon sequences
Seq C1 exon
ATTCGGGAACAAAGAGGAGTACATGGCTTTCATGAATGACTTTCTAGAGCACGAGTGGGCTGGTATGACCCGTTTTCTGCTTGAGATCTCGAATCTTGAGACAATCTCCAACACCCCGGGCTTTGAGGGCTACATTGACCTGGGCCGGGAGCTGTCAGTGCTTCACTCGCTGCTCTGGGAGGTGGTGTCTCAGCTGGACAAG
Seq A exon
GTACTGAAATCCCTCCAAACCATTTTTACTGCAACAGTACCTCTTAGAATGAAATCTACTGTAGGCTAGATTTACAAGAGCTGAGGTTCAATTTGTTTATTAGACATAAAAATATTTAGGGATAAAACACACCTGCCTGCCAGAGAGATGTTATGTAATGCTTTTGCACTCAGTAATTTTTTTTCTTCATTCTTAAATTTAGATAGAACAGTGAATACTTGCTCAACATTACCCCTGTCACAAACAACTTTTTGGTGTACTGTATATTAGGGATGGATGTCCCTATCTGGTTTTTTGCTCTTGAGTTTGAATCATTTGATTTTGAGTATCTACCAAAACCTGATCCGATACTTCTATAATACATAAAATGAATAAGCAAGAGCGAAGAAACAGATCCCGGATGTTCCTTATTTTTAATTTAATTCACCTTATTTTAACATTCACTTTTAACACTTAACAAACAGAGCACTTCTGTGAGGTAGCTTGAACAATTAAGTAATAAATAACATTAATTATTCACTTTTACACTTTAGTGCAACAGTAAATGTAATTAAAATCTAATATAAAAACAAATAGCACCTTAACTTAAAATACGCGGCAGGCAATCCCAAGTTTACATATCTCACAGTTTTCATAGCCAATGTTGTCGTCATCAACTTCATAATACCTCCAGACCGCAGACATACTCATGATTTTCACTTCAAGCTGCTTCCATGTTCTCCTTTGCCGACATTTAACCAATAGCGTTTTTGCAACATAGTGATATCATGTCTCCTTTTTCTGTGTAAAGTCAAGAAAGAGGCCTAACACATGATTAGATTTGAACATCACTATTGTATATTATGAATATATAATTATTTGCAATATATGATTCTTTAACTAGTGCTAATTTGCTTGTAATTTTGTAGATCTCACATTGCAATTTTGCATTCACATATTGGACAGCAAATGCAATCATATAAGAAGGCATGCATATAAGATAATGTAACACCATAAGCTGGTTAGACTAATAAAATGGTAAACTTTGCAATAAGTGCTTTTTATTGGTTTAATTATTTTATTTATTAATTTTAGATTAAAAATATGTTAAAAAAAACCTATGGAAATGCCAAATGAGTTATTGGCTGCAGTCGTCTAATGACTTTCACCAACAGTTATATTGCACAGTAAATCTGGAAATTAATAATCACAACAGGTCCACATAACAAACATCAGTTGAACTGGAACATGAATGAAATAAATAGCATGAAAAATTATTGAGTGCATCTTTAAGAGTGTCCACTCAGGAAGCACATTTCATACCTCAGAGGTATTGCCGCAAATGTCTTATGCTGAGCTGTGTGCTTCATGTCAGTAATGCTTGATCCTCACAAACATTATAAGGATGAGGCTGATTTTAATTGTTCAATGGCTGTGTGTGTGTGTGACCAAAAAAGCTTTGCGCTTGTTTGCAGTGTTATGACATTAACTTATTGTCTAAGTTAAGTTATCCTGAGGTTAATGTCCCTGTTTAAACTGGTACAGTCAGTTGGATGGCATTGGACACGGCGCATTCACACATTCCCATATGCCCTCCCTCTAACCCTTGCTGACCTGTTGCGTCTGTAGCATGGTTTTGTTTTGACTGCACTTAAAACCTCCCTGCACAATGTTTTTGTTTTTTGCCACGATTTAATTCATCTCAACCTCTTTTTTACCTTGTCTCAGACATAACCTTCTGTTGTTGTTTGATGCATGCTCTGCGTTGGACCATTTTTACCCTGTTTGTTTCCTTTTGTTGTTTTTGGAATGGCTTTTGTTGTTTTTTTGTAGTCGCATGTGTTTGTTTTTTCTTTTATTTATCCCTAATTTGACTTTTTTCCTTTTGTTTTCTCCTCTGTTTACCCATGCCACTATCCATTCCACCCTTTCCTGTCCGACACACTGTGTCTCCATGGTTACGCTGTCCTACCACCAATGCATTATGGTGCCTACTATCTCGACCAACCAAAATAAAAAAAACTCCTGCCAAACCACCAATCTGCCATCTGCACCCTCAAACTCTCGGGCTCCATGTGGTTGCCCTCTATGGTCCATAATGTGGTTACCATGGTAACGCGCCAACCCAGGGTGACAATTCCTTCCTGCAG
Seq C2 exon
GCGACGGTGGCCAAACTGGGGCCCCTGCCACGTATCCTTGGCGATATCACCCGCTCGCTGTCCAGCCCTACTCCCATCCAGCAGCAGCTCAGGCGCTTCCAGGACCACAGCTCTGCTCATGACATCAGTGGAAGTGTGTCCTCAGGACTGCAGAGAATATTTGAAGACCCAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257:ENSDART00000113489:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(8.8=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]