DreALTA0022389-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35857140-35859649:+
Coord C1 exon
chr2:35857140-35857341
Coord A exon
chr2:35859450-35859470
Coord C2 exon
chr2:35859471-35859649
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ATGGTAACGCGCCAACCCAGGGT
3' ss Score
-0.21
Exon sequences
Seq C1 exon
ATTCGGGAACAAAGAGGAGTACATGGCTTTCATGAATGACTTTCTAGAGCACGAGTGGGCTGGTATGACCCGTTTTCTGCTTGAGATCTCGAATCTTGAGACAATCTCCAACACCCCGGGCTTTGAGGGCTACATTGACCTGGGCCGGGAGCTGTCAGTGCTTCACTCGCTGCTCTGGGAGGTGGTGTCTCAGCTGGACAAG
Seq A exon
GGTGACAATTCCTTCCTGCAG
Seq C2 exon
GCGACGGTGGCCAAACTGGGGCCCCTGCCACGTATCCTTGGCGATATCACCCGCTCGCTGTCCAGCCCTACTCCCATCCAGCAGCAGCTCAGGCGCTTCCAGGACCACAGCTCTGCTCATGACATCAGTGGAAGTGTGTCCTCAGGACTGCAGAGAATATTTGAAGACCCAGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257-19-18,19-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.401
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(8.8=78.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGAGGTGGTGTCTCAG
R:
GATGGGAGTAGGGCTGGACAG
Band lengths:
108-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]