BtaALTA0024552-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61291502-61293949:+
Coord C1 exon
chr16:61291502-61291703
Coord A exon
chr16:61293750-61293770
Coord C2 exon
chr16:61293771-61293949
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTATTATCCAATTAGGGT
3' ss Score
6.92
Exon sequences
Seq C1 exon
ATTTGGTAACAAGGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
GGTGAAAATTCCTTCCTACAG
Seq C2 exon
GCAACCGTGGCAAAATTGGGACCTCTCCCTCGTGTTCTTGCTGATATTACCAAATCTCTGACTAATCCTACACCAATACAACAGCAACTGAGACGCTTCACTGAGCATAACTCCAGTCCAAATGTCAGTGGAAGCCTCTCCTCTGGGCTGCAGAAAATATTTGAAGACCCTACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537-17-18,17-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.4=70.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACCCCAGGCTTTGATGG
R:
GTCCCAATTTTGCCACGGTTG
Band lengths:
116-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development