BtaINT0122615 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61291502-61293949:+
Coord C1 exon
chr16:61291502-61291703
Coord A exon
chr16:61291704-61293749
Coord C2 exon
chr16:61293750-61293949
Length
2046 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTATTATCCAATTAGGGT
3' ss Score
6.92
Exon sequences
Seq C1 exon
ATTTGGTAACAAGGAGGAATACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGCTTTCTTTTGGAGATCTCTAATCCAGACACCATCTCAAACACCCCAGGCTTTGATGGTTACATTGATCTGGGCCGAGAGCTTTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
GTAAAGTAGGCTGGAAGGGCAATGGGAGATGGGAGGTAGAGCACCCTGAGCCACATGAATTCTGGAGAGTGTCTACGGAGTGATCACATTTGTGCTCTCTGCTAGTTGAAAGCAACCTTTTGACCTAGAAGTCTGGGAGGAAATTGTTATTATTTCTAAGTAAAATGTGTGCCCTAACCAACCAGGAAATTCTAGAAACTCATGAAATTATTAACATTTATTTTAAAGTAGTTACCTTGATTAATGGGGTATATATTTCTATAAATATGTGTGTGTATTTGCCTAGAAACTAATATTGAATATTGATGTGTGATGCGTTATTCATGGAGTGTAGAATGAGACGAAACCTCATATAGTAATTTCTAACAAAAGTGTGGACTTAAGAAAATACTGAGACTATCGTGTTTAAGTAACTTACCATGAGATTTATTTTATCATACAAGTCAGAGGGTTTACTATAACTATTGGTGTCTATAGAGTTATACGGGATCTGAAAATCCTTATTTTTTTTCTCTGCAGATGTGAATTAATATAGAAAATGATCATTTTAATCCTTTATTTTCTGACTATAAGCTAAAAAGTATATATCATATTAATAACTAAATGTATACCTGTCAATCATTTTCTTCCTTCTGGAATTTTGCAAAGAGGAATAGAATTTATTATGGAAAACAGTCTAACATATTTTGGCTAGGTTTATCATAATAATTATTTATTGATGTTTTTGTTTGCCACAGGTACTTTATAAGTATCTGTGGTGGTATGTTAGAATAAACTCAGACAACAAAATTATTTAAATTATTTTTCTGTAATTGTTTTCCTCCATTTCCTATCACCTTTAAAAATGACACACCAATAAAATGGGGAAGAAGAGAGTAAAACTTATTAAAAAAGACTAGTTTCCTAAGGAAATATAAATGGTAGGGTGTCCACTGGTACTAACACATTTATAAAATAATACTGTTTCTTATTCTTATGGACCCATTAGATTTTAAGTTGTGGCTATGCTAAGGGTAAATTCCTTGAATAAGAATCTTGGCTCAAGAAAGTCGAAGGAGTAAAGACATTCTTCAGATGGCCTTTGTCCTCAACCAGGAGTCTACTGATTGTTGAGGAGACAAGGAAAACCCAGAGGCAGCCATATAAAACTACCTAATCATTAAGGATTCCCATAAGACCCCGTGAGAATGAGAATTCCCCAAAGGAAAAAATGATTGAGATGGATAAAGCAAGTTGTAAAAGGTTATTCTTCACTGAATAACACCATCAGTGGGCTGTGGATACAGTTATATCTTGTGAAATCAACCTGGTTTATTCAGGGGCAAAGTCTTTTTAACAGGCTTTACTGTGTAAACACATTTTCTCCTTTTTAATTAATCTGTTTGGTCTTGGGAACCAGCAGTACCTCTAGATGTATCTCATAGAGTTTACCTGATCTTGCTGTTTAAACAAAAACATTGTCTTGCTGATGCAAATTCAGTTGGCAGTAGGTCAGCATTCCCAAGGTTAAATGACTAGCGGATGACAGTGATCAACTGTGTGGCCTGCAGTGCTCTGGACCCCTGAATGCATCACCTTCTTGTATGCTGGCATGCATTTCTTTCCTCACATGATCCCTTCTCTTTGAAAGTTTCATCACACTAGCCAGCCCTCTAGTCCTAAATTCCTTTTTGGTTAGAAGGTGTTTGGTTCTTCCCCTCCCTTCCCCTCCCTTGATCTACCAGCCTCCCAAAGATGTAGTTTGCTTTGCATGCCTATTTTAGTTGGAATGGCAATAGTTTGGTTGTTTTGAGCATGTCTTTTAATTTTTATTTGCATAATCCTAATTTCTATTTCCTTTCTTTCCTCAATGTCTGCTGCATTTTGTTTCGCCTCCTCCATTCATCTCGACGCCATGGTTCTGCTGCTCCATAACAATGCATTATGAACCTGCCACTCCCATACGCAAACACCTACCCTTCCCTTCAACCTCCACCCCTCCATCAATGGCATCGTTGTCCCAAAAACAATCTGTGGTGGATATCGCAATGCTTATTATCCAATTAG
Seq C2 exon
GGTGAAAATTCCTTCCTACAGGCAACCGTGGCAAAATTGGGACCTCTCCCTCGTGTTCTTGCTGATATTACCAAATCTCTGACTAATCCTACACCAATACAACAGCAACTGAGACGCTTCACTGAGCATAACTCCAGTCCAAATGTCAGTGGAAGCCTCTCCTCTGGGCTGCAGAAAATATTTGAAGACCCTACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537:ENSBTAT00000020658:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.4=70.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development