MmuINT0132035 @ mm10
Intron Retention
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157158659-157161326:-
Coord C1 exon
chr1:157161125-157161326
Coord A exon
chr1:157158859-157161124
Coord C2 exon
chr1:157158659-157158858
Length
2266 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTGTTGTCCAATTAGGGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTTGGTAACAAAGAGGAGTACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGGTTCCTTTTGGAGATCTCTAATCCTGACACCATCTCAAACACCCCAGGCTTCGATGGTTACATTGATTTGGGCAGAGAGCTGTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
GTAAAGTAGGAGGGAGGGTAGTGGGAAATGGGAGACACTGAACCTTAGTGTCCAGATTCTAGCAGACATCTGATAGCACACGACCTTTCTGCTGGCCAAGCGACCTTCCTTACTTTAGACATCAAAAGTAAATGATTAAGTGAGTAATGTACAGCCAAAATTCCTAGAGAGCCTTGGTATTACTAATATATGCTAGTGTTAAGTATAGAAAGAAAGTTTTCAGATATGTGCATGTATATACATATCTGAAACATATATATACATATTTACCCTGGCAGTGTATATATATATATATGTATATGTATATACATATATACATATCTGAAAACTTGCCTAGAAACTATTACCAAATACTAGAGTGAACATCTTTATCTGTGTGGGAGAAACTTCATCTAGTAATTTATAAGGACAAGAAGTTTTTTAAAAGTTCAAGTTTGTAAAATAATGTTCATCATATTTAAGCTAGCCTCACCATGGAGAAGTTGTTTTTCGACTATGTATGTCAGACTTGGATATAATTTTTAGCACTAAAAGCCATATAGCATCTAAAAGTGTGGATGTTTTCTTTATCTACCAATGTGAATTAAGAATACAAAAATAATTTATTTTTAATGACAAATGAACTTTGATTATTTTAATAACTGAATGTAAAGTATACCAGTCATTTTCTTCATTCTGAGGTCTTACAAAGAGGGGTAGATTCTGTAGTAGGAAATGGCTCAGTAATCGGTGTTATTTTTCTGTGATAAGGACTTACTTGTTTTCTTAAATTTTTCTCAACTATAAAATGTTATATATAATGTTGAGTAATAAACTTCTTAGTAAATTTCACTTTCTAGAATAAACATGTAGATGGAAGTATGTCCACTGGTACTTAAAATGTTTATAAAACCATAAACCATTCCATATTCTCCAAGAACTACATCTTACATCTCCACTTTGAAACATGCTAGGTAGATATTAAGTTGAAGTTATGTAGAAAGTAAATTCTTCTTTATGAATCTTAGCACTGTTGAGCAAGTAAAGGCATTTTTTAGATGACATTCATATCTAGTCTAACAGAGTAGAAGAGTCTTGTTAGTTGACTGGAGCGTGTAGCTAAGGGGTAGAGTACCTGCCTGGCATGCACAGAGCTAGGTTTGAATGCTAGCAATAAATGCATACAATAAATTCCATAAGAATACTTTCTCACCATGAATAATGCCCTAGGTTTGATTGCCAGACTCACATCACACACACACACATCTTATTGATCTTTGAGAAGCTAAAGAATCCCTAAAGGCAACCATGACTGTTGGGCTAAACTGCACAATGGTTGAGGATTCCATGAGAATCCACGAGGATAAGAATTGCACTAGGAATGCTGGATGAGGTGGTACAAACCTTGAATCCCTGTACTCGGAAGGCAGATAGGTGGATCTACCTGAATTTGAGACTAGCCTAGTCTAAAAGTATGTTCCAAGACAGACCAGACTACTAAAGCAATTATTTTAAAAAGTTGTTGTTAGCAATTATTTTTTGAAATAGATCTCATTCATTTATGAAGTCTCTTTTAATACATTTTTCTGTGTAAGCACATTTCTTCATTTTTAATCTTTGGTCCTGGGAACTAGAAGTTTAGGCATATCCGAGAAGAGTGAAAGATGATGTGATTCTCCTGGTTTGTTTGGTTTGGATGGTTAGCAGGAGACTCAGTTGACAGTGAGTCGAGCTGCCTGAGATGAAGTGGATAGTGGGTTGTAGTGTAAGCTAACCACACACCCTGCAGTCTCTGCCCCAGGCAGCTCCTTCTGTATGTTGGCATGCACTGCTTTCCTCACATCATCCTTTCTCTTTGGAAACTTCATCACACAAGCCAATCATCTGATCCTCAAGTTTCTTTCGGTTAGAAGGTGTTTGGTTCTTCCGTTTCCCTCTCCATCTTGGTCTGGTAGTCACTCAAAGCCTTAGTGTGCTTTGCATGCATATTTTAGTCGGAATGGCAATTGTTTGTTTGTTTGTTTGTTTGTTTTGAGCATGTCTTTTAATTTTTATTTGCATAATCCTAATTTCTATTTCTTTCTTTCCTCAATGTCTACTGCACCTTGTTTCGCCTCCTCCATTCATCTCGACGCCATGGTTCCGCTGCTCCATAACAATGCATTATGAACTTGCCACTCCCATATACAATACCTACCCTCCCTCCAACCTACATCCTTCCGTCAATGGGCATCATTGTCCCAAAAACAATATGTTGTGGATATCACAATGCTTGTTGTCCAATTAG
Seq C2 exon
GGTGAAAATTCCTTTCTACAGGCAACTGTGGCAAAACTGGGACCTCTCCCTCGTGTTCTTGCTGACATTACCAAGTCTCTGACTAATCCTACGCCAATACAGCAGCAGCTAAGACGTTTCGCTGAGCACAGCTCCAGTCCAAACGTCAGCGGAAGCCTCTCCTCTGGGCTGCAGAGAATATGTGAAGACCCCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565:ENSMUST00000078308:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(13.9=70.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types