GgaINT0038836 @ galGal3
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
NA
Coordinates
chr8:6767336-6770272:-
Coord C1 exon
chr8:6770071-6770272
Coord A exon
chr8:6767515-6770070
Coord C2 exon
chr8:6767336-6767514
Length
2556 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTGAAAATTCCTTCCTACAGGCG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GTTTGGTAACAAGGAAGAGTACATGGCTTTCATGAACGACTTTCTGGAACATGAGTGGGGGGGAATGAAGCGATTTCTCCTGGAGATCTCTAATCCAGATACCATCTCAAACATGCCTGGATTTGAGGGCTATATCGACCTGGGCAGAGAGCTCTCAGTTTTGCATTCCCTCTTATGGGAGGTTGTGTCCCAACTTGATAAG
Seq A exon
GTAAAGCAGGCTGGAGGCCTGGGAGGGTGAATCCGGCGATTGTATCATAGCAACTGTAAACACTGGGAAACATCAAGGGAGCAGCTGAAGCCTGCACTGGGGAAAGCTTATTCAACAGCTTCAGAGAGGAATGTGTGATAATGGCATTTCACAACTGCTCTTTCTCTGATTCTTCATCAGAGCATGTGAAGTGGTTGGGCTCCAGCAGTAGTGCAAACACTTTACAGAGCCTCAAGTAAGGCTGGATGTTAGAAGTGGAGAAGGCAGCACTTAAAAATGGGCCAGGTTCCTCATAAGTGATCTGGGAAAAAGGGAGGAGGGTGTATGGGCAGAAAGTGAAAATCTTGTAGCCCTTGTCAATGCTCCTCTGGTGCAGGAATGTGCTGGCCAGGCAGAACTGTTCGTGTTCAACCTCTGGTCCAAAGCCAGCGGAGATGGTCTCATTTCTGCAGTCTTCAGATTAGGTTTCAGTAGGTAGGAGGGTGCCATGTAAAAAGCTGGTTGGACTCTCAGCTTCATCCTGTAACAAAGGCAAGGTGCTTTCAGCCTCTGCATCATGCTGGGATCAGATACGTTTTCCAGACTCCATTCTGCTGATCGCAATAGATGCTCATTGCCAACGGGAAGCGTCATTTCCATTTAGCTATAGGAAGAGAAGAGGCATTTGTTTGCTGTGTGGCTTTTCAGGATCCCAACTCATTAAAACCTTGATAACAAAGGTAGTTGAAAAGGATCAGAAAAGACGAGCTGAGCTTCATCATTTCTTTTTTTCCATGGAACTATTCCATATTTTAACTTTAGAGGTGCATTATTTTGTCCGTATTTCCACTTATATCATTCTGTTTCTTTTGTAACTGGAGAGGTGAGGTGAGTTGCAGTGCACTCTTGTATTTTTATTACCCTCAGGTTTGCCAAAATAGTGATTTGTTGGGTATCCCTTTCCTCACAGTACATTCTTTGAAAGAAAAATGAAAAAATGTGAGCTTGTTGCATCAGAGTAAACAAGAAATGTCCTTGTCTTGAAAAGACAATACGTACTAATTGTCATTTGATAACAATTTATGGACTTGTTTGCCCCTTTAGTTCATACATACACACAGAACGTCACAGGCAGTAAGGTCTGCTCTGAAGGCAGCTCAGCAGCCTTAGGAAAGCAAGCCAAGGGAGCACTCAGAAGACCATTGCCTCCATTTCTCTCGGCTGTGGTGAACTCATGAGTGCCAGTCAGGTGTCAGGGCAACAGAAACCCAGCTCCAGTCTTTAGAACTGCAAACGGATCCTTGCGTTCAGTTCCTCTGAGCTGCTCCTGGAATGCAGATGGTGTAAATGCAGAGGAGAGGGAGGAGCCACGCCTGGCTGGGCCATCAAAGCAGATCTGCTTTGCCCGTTCTGTGGGTTAGATGCAGGGATCTGTCCTAACAGGAGCTTGGGGGCTTATGTAGTGGTTTGCTGAAAAAAGAACTAAGGGGTAAAGTTACGTTGCAGTGCTGCTTTACTGCAGGTAATGATTGGGAAATGATGAGAGAAATCACCTCTGAGATTTTAATAGACACAGAAGTAGTGCTGGGAGATAGTGTCTGTAAAGAGACCTCTCCTTGGAGTCAAGCTGACTGAATATCTGCCTGCAGGCAAAATACGGATGTCTTTCAGGGGAGTGGTTCTTGTGGCAGGGCTTTACCTAATGATAAACCTCCAGCATTTCCCCTTCTTCCTTCAGAGCCACGAGCCTGAAGGTGCCCTACAGGTGGTATAGCCAGTGACCTGAAGGGAGAGAGAGGCAGCATGAATGAGCAACCTTCCAGGGTCAGTTGCCCTCCCCTGGGCCCAGCCAGCACTGAGCAAAGGGCATTGTACACCTATAATCCCAGGCTGATGTGGTAACGTGGGGATGAGGATCGCTGGTGTTTTCATGAGCTTATTCTTAAGCAGGGAAGGATGCCTTAGTTTTTGATAACAAGTTGCTACGGAAGTTGGCATCAGTGCAAGATGCCGAAAAACAAATGGAAACTTCCCCTCTTCCCATCTCCCTCAACCCTTGCAGTCCTGCCGTGATCCCTGTGAATGCCGCACACCCCTTTGTCTGTTGGCATGCATTTCCTTCACCGTGTGACACCCTTTGCCTGGAAAGTTCCCCCACCAGCTGAACCTGTAGTCTGCGAATGCCCGTTAATGAATAGATACCATAGTTTTCACTTTGACCTCACCCAGCCTGGTCCTAGTTTGCTTTGCATGAGAGTTTTGCATTGGAATGGCCATAGTTTTGTTTTGTTGAGCATGATATTTTTTTTTTTTAATTTTTGGAGGTCAATCCTAATTTCTTTTCTATTTCCTTTTCTTTCCTCAATGTCTGCTGCACCCCGTTTCGTCTCCTCCATCCATCTCGTCGCCGTGGTCACCCTGCTCCGTAACACTGCATTACGGTCCTGGCACACCCACACACAACCACCCACCTTCCTTCCTTCCACCTCCGCCCCTCCGCCTCTGTGCATCGTTATCAAAAACTGGCGGATGTCGCGGTGCTTGTTGTCCAATTAGGGTGAAAATTCCTTCCTACAG
Seq C2 exon
GCGACCGTGGCAAAACTGGGACCTCTTCCTCGTATTCTTGCCGACATCACCAAATCAATGACCAACCCTACGCCAATACAGCAGCAGCTGAGGCGTTTCACTGAGCACAGCTCTAGTCCAAACGTCAGTGGCAGTCTCTCCTCAGGGCTTCAGAAGATATTCGAGGACCCCACTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.517
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.4=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]