RnoALTA0033116-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74796632-74799306:-
Coord C1 exon
chr13:74799224-74799306
Coord A exon
chr13:74796811-74796831
Coord C2 exon
chr13:74796632-74796810
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTATTGTCCAATTAGGGT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GCTTCGATGGCTACATTGATTTGGGCAGAGAGCTGTCAGTTTTACATTCCTTGCTTTGGGAAGTAGTTTCCCAACTGGATAAG
Seq A exon
GGTGAAAATTCCTTCCTACAG
Seq C2 exon
GCAACTGTGGCAAAATTGGGACCTCTCCCTCGTGTTCTTGCTGATATTACCAAGTCTCTGACTAACCCCACGCCAATACAGCAGCAGCTAAGACGCTTCGCTGAACACAGCTCCAGTCCAAATGTCAGTGGAAGCCTCTCCTCTGGACTGCAGAAAATATTTGAAGACCCCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917-27-25,27-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.342
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(4.0=7.1)
A:
NA
C2:
PF120043=DUF3498=PU(13.9=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTGGGCAGAGAGCTGTC
R:
TCAGCAAGAACACGAGGGAGA
Band lengths:
111-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]