MmuALTA0014890-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:159088790-159091457:-
Coord C1 exon
chr1:159091256-159091457
Coord A exon
chr1:159088969-159088989
Coord C2 exon
chr1:159088790-159088968
Length
21 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
AATGCTTGTTGTCCAATTAGGGT
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTTGGTAACAAAGAGGAGTACATGGCATTCATGAATGATTTTTTAGAACATGAATGGGGTGGAATGAAGCGGTTCCTTTTGGAGATCTCTAATCCTGACACCATCTCAAACACCCCAGGCTTCGATGGTTACATTGATTTGGGCAGAGAGCTGTCAGTTTTGCATTCCTTACTATGGGAAGTAGTTTCCCAACTTGATAAG
Seq A exon
GGTGAAAATTCCTTTCTACAG
Seq C2 exon
GCAACTGTGGCAAAACTGGGACCTCTCCCTCGTGTTCTTGCTGACATTACCAAGTCTCTGACTAATCCTACGCCAATACAGCAGCAGCTAAGACGTTTCGCTGAGCACAGCTCCAGTCCAAACGTCAGCGGAAGCCTCTCCTCTGGGCTGCAGAGAATATGTGAAGACCCCACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565-21-18,21-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.4=78.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTTGGGCAGAGAGCTGTC
R:
GTCAGCAAGAACACGAGGGAG
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: