HsaALTA0007068-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:24468]
Coordinates
chr2:178985014-178986086:+
Coord C1 exon
chr2:178985014-178985136
Coord A exon
chr2:178985901-178985906
Coord C2 exon
chr2:178985907-178986086
Length
6 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ATTTACTTTTTTTTATATTGTCG
3' ss Score
-2.21
Exon sequences
Seq C1 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
Seq A exon
TCGGAG
Seq C2 exon
AACAACAATCTGAATTTTCAAGTTTTGACAAGAATGATAGCCGAGGCCAGGAAGCAATCTCCAAACGCTTGTCAGTTGTATCAAGAGTTCCTTTCACTGAAGAACAGCTTTTCAGCATTTTTGATATAGTACCAGGATTGGAATATTGTGAAGTTCAACGAGATCCTTATTCAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=4.8)
A:
NA
C2:
PF0007617=RRM_1=PU(49.2=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAAGAAGCTTTGGGACA
R:
TTCCTGGCCTCGGCTATCATT
Band lengths:
103-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)