HsaINT0138577 @ hg19
Intron Retention
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:24468]
Coordinates
chr2:178985014-178986086:+
Coord C1 exon
chr2:178985014-178985136
Coord A exon
chr2:178985137-178985906
Coord C2 exon
chr2:178985907-178986086
Length
770 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTTTTTTATATTGTCGGAGAAC
3' ss Score
-3.19
Exon sequences
Seq C1 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
Seq A exon
GTAAGTAGGCAACCTTTACTTTTAATAGTATAATGTAGTATATGCAATCTAATTTGGGTTTTAAAGAATACTCTGTTATTGGGCATCTATAAATTTCACCTAGTGAATAAAAATCTTAAATGTAGTTTTTTTATTCCTAAAATGTGGATTATGACTCCTAAAGTTCTTAATATTTAACACTTATTTTGTTTAACTGATTTCTAATTATAGTTTTCTCTGTTAAGTTACGCATTCCTCATATTAGAAACTATTACCACTGCCACTTTTTTGGGTGAGCTTCTGCCTCTATATAGCTGACCAAAAACTTAAAAAGACATATGTAGAGATCCTCTCCGTATGAGTCCTAAAATTTTGTTCCAGAACTACTGCTACTTTAAAATTAGGGCTACAGAAAGGAGAGGAATGGTAAAAGTAGAAGCTCTAATAGAAAAAGGGGAAAATGGGTAATGAAAGTAAGGCCTGTGAATGTTATTTGACGTAAACATTCAGGTAAAATACTTACCATATTTTTCAGTTTTGCATACTAAACTTCTTTCTGTGAAATTAGACTATGCATTTCTTCTTATATTTCTGCATTAAAGGTAGGGGAGTGGGGAGAGTTGTCTCTTCTTGTCATTAGTCCCATCGGTAGTTCTGATGACCAGAAGCGTACTACAAAATACAGTGCCTTTATTCAGTACAATGGACTCTGTTTTCTAGTATTTAAAATGTTAAGCGAATTGTTGGCTGTGTAGAAATCTAAAGATTTACTTTTTTTTATATTGTCGGAG
Seq C2 exon
AACAACAATCTGAATTTTCAAGTTTTGACAAGAATGATAGCCGAGGCCAGGAAGCAATCTCCAAACGCTTGTCAGTTGTATCAAGAGTTCCTTTCACTGAAGAACAGCTTTTCAGCATTTTTGATATAGTACCAGGATTGGAATATTGTGAAGTTCAACGAGATCCTTATTCAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-RBM45:NM_152945:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.068
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=4.8)
A:
NA
C2:
PF0007617=RRM_1=PU(49.2=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAATCTTGGCTGAACCT
R:
ATTTGAATAAGGATCTCGTTGAACTT
Band lengths:
294-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)