GgaINT0047205 @ galGal4
Intron Retention
Gene
ENSGALG00000009202 | RBM45
Description
RNA-binding protein 45 [Source:RefSeq peptide;Acc:NP_001026423]
Coordinates
chr7:15038946-15039571:-
Coord C1 exon
chr7:15039461-15039571
Coord A exon
chr7:15039126-15039460
Coord C2 exon
chr7:15038946-15039125
Length
335 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TTTTTGTGTTGATTCTTGAGGTG
3' ss Score
1.31
Exon sequences
Seq C1 exon
GCTACCGGGCCATTTTGGCTGAACCGAAAAATAAGTCATCTGAATCTTTTGAACATGAATATTATAGCAATAACGCAAGGCAAGAACCAAGAGGAAATGTCTTTCCATTTT
Seq A exon
GTAAGTCACTGTTTTTTATACTGAAAATTACTTGTAGCCCAATCACAGTCTAAGGGCAGTTTGGAAGAAAGCAGTCTAAAGGAAGCCTAGTTTGGCAGCTAGTAGATTGGATGTTTGAGTTAGAAATGAGTAGGGCATTTCACCCCCATATTTTTATGGCATGCTTTGGTCTAGTTGCCTGATGAGTTCAAGACCTGCATTCATGGACCATGCATATTACTTTTGGTGTAGAATTCACTTAGATTGCTTCTAAAATTTGAGTGAAAAATATATAGGAATTGAAGGCATAGTTAATATAATGAATTTGATTGTTTATTTTTGTGTTGATTCTTGAG
Seq C2 exon
GTGCTCAGCCAGAGTTCTGTAGTTTTGAAAAAAATGAGACCAGAATTCAGGAGTCAGTCTCCAAACGTCTGTCAGTGGTATCACGACTTCCCTTTATCCAAGAACAGCTGTTTGCCCTTTTTGATCTAGTCCCAGGACTGGAGTATTGTGATGTTCAGCGAGATCCTCATACTAATAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009202:ENSGALT00000014983:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=5.3)
A:
NA
C2:
PF0007617=RRM_1=PU(48.4=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACCGGGCCATTTTGG
R:
TTAGTATGAGGATCTCGCTGAACA
Band lengths:
286-621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]