BtaINT0123381 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006168 | RBM45
Description
Bos taurus RNA binding motif protein 45 (RBM45), mRNA. [Source:RefSeq mRNA;Acc:NM_001130753]
Coordinates
chr2:18766878-18767944:-
Coord C1 exon
chr2:18767822-18767944
Coord A exon
chr2:18767058-18767821
Coord C2 exon
chr2:18766878-18767057
Length
764 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTTTTCTGTATTGTTGGAGAAC
3' ss Score
-0.97
Exon sequences
Seq C1 exon
GTTATAGAGCAATCTTGGCTGAACCTAAAAACAAAGCATCTGAATCCTCAGAACAAGATTATTACAGTAATATGAGGCAGGAGACTTTAGGACATGAACCTAGGGTAAATATGTTTTCATTTG
Seq A exon
GTAAGTAGGCTATCTTTACTTCAATGGTATAAGTAGTAAATATTCAGTCTGATTTGGAGGGTTTTTTTAATATTCTTTTATCAGCAGTCTAAATCTCACACAGTACATAAGAGAATTTATAGGGTTTTTTAAAGTTGGTCATGGTCCCTAATGTCCTTATTATTTAACATTTAAGTTATTTCCAGTTAAGGTTTTTTTATGGCTAGTTTTGCATTATCTAAGTGTTACACTATGTCACTGCCATTATGTGAGGGTGGGTTGCTGCTTATAAGTAGATGATCAAGAAGTATGGAAAACATACATAGCTATCCCCTCAGTATGAATCCTAAAATTTTATCCCTAAATTACTGATGCTTTAAAATTAGGGTTAGAGAAAGAAGAGGAATGACAACAGTAAAGTTAAAAAAGGGGGGAAATGTATGATGATGGTAAGACCTGTAACTCTTATTTGGCATAAATTTGCTTTTAGGTGAAACACTTGCCATATTTTGCAATTTTGCATAGTAAGCATATTCCTGTGAAATTAGACTACACATTTCTGCTTACATTTTTGAATAGAGGCGAGGAAATGGGGAGAGTTGTCTGTTTTCTCATCCTGTCTCTCCTGATAGTGCTGATGACCAGCATACTACAGAAAACAGTGCCTTTGATCAATGCAGAGGACTCAATGACAGTTCATTTTATTTTCTAGTACTTAAAATGTTAAATGCATCTTTGAATGAATAGAAATGTAAAGATTTGCTTTTTTTTCTGTATTGTTGGAG
Seq C2 exon
AACAACAATCTGAATTTTCAAGTTTTGACAAGAATGACAACAGAGGCCAGGAAGCTATCTCCAAACGCCTGTCAGTTGTATCAAGAGTTCCTTTTACTGAAGAGCAGCTTTTCAGCATTTTTGATATAGTACCAGGCTTGGAATACTGTGAAGTCCAACGAGATCCTTATTCTAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006168:ENSBTAT00000008111:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.066
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=4.8)
A:
NA
C2:
PF0007617=RRM_1=PU(49.2=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAATCTTGGCTGAACCT
R:
ATTAGAATAAGGATCTCGTTGGACT
Band lengths:
294-1058
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]