RnoINT0125233 @ rn6
Intron Retention
Gene
ENSRNOG00000010595 | Rbm45
Description
RNA binding motif protein 45 [Source:RGD Symbol;Acc:628862]
Coordinates
chr3:63227315-63228437:+
Coord C1 exon
chr3:63227315-63227437
Coord A exon
chr3:63227438-63228251
Coord C2 exon
chr3:63228252-63228437
Length
814 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TGTGTATTATATACATATAGTTG
3' ss Score
3.37
Exon sequences
Seq C1 exon
GTTTCAGAGCACTCTTGGCTGAACCTAAAAATAAAGTGTTGGAGTCCCCAGAACAAGATTATTACAGTAGCGTGAGGCAGGAGACTTTGGGGCACGAGCCTAGAGGAAATCTGTTTCCCTTCG
Seq A exon
GTGAGTGGACTGCCTTTACCCCTTTATGTTCATATGTAGCATATGGCTGTATGTGAGCTCACTTCAAGCCATTCTTCTGTCAGCAACCTGAAAGTGTTACCTAGCAAGTGAAAATACGATATGTTGCTTTTTCCTGAGAAGTAGCTCAGTTCTAAGATCCTTAGTTCCTAACCCTTGTTTGTTTGATTATTTGCAGCGTAGATCCCCCTGGCTAGCTGCACATTATCTAAATACTAACATGCGATTACTATACATTTTGCGCGTGAATTCTGCTTTTTTGCACAGTCAACCAAAAATATGAAAATTTTATATGGGAATCCCTTCACCGTGCTACTGGAAAAGCTTGGTTTGCAGAGAGAGAGCAAAAGCAAAAGCTGGGAAGGGGGACAGGTTAGAGTCCCCGGGGGCACTGGCAGAACTTTTCAGATAAGACTCTTGCCATATTTTACAATTTAAATACTAAACTCTCTCCCGTGGTGCTGGACTAGACACTCCTGAGGTAATTCTTCACTGAAGTCAAGGAAGGAAGTGGGTGAAGCTGTCTGCCACCCCATCACCGAGTCTCTGTGGTTGTAGAAGAGTGCAGTACTACAAAGGAGGGGAGTAGATTTGATCAGAACGCAGCCTATGCGTACATGAAATTCTCGGAGGATAAATATATCTTTAAAAGAATAACACAAAATATGGTATCCCCTGTCTAGACTTTTCAAATATCCTTGTGCAACAATGGCTACATAATTTTTAGTGTGTGGAAATGTAATTATCTACTTATATGTGTGTACTATGCGTGTATGTGTGTATTATATACATATAG
Seq C2 exon
TTGGAGAACAACAATCTGAATTTTCAACTTTTGACAAGAACGATAGCAGAGGCCAGGAAGCTATCTCCAAACGCCTGTCGGTGGCATCGAGGGTCCCCTTCACAGAGGAGCAGCTCTTCAGCATTTTTGACATCGTCCCAGGGCTGGAGTACTGTGAGGTTCACCGAGACCCTTACTCAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010595:ENSRNOT00000042968:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=4.8)
A:
NA
C2:
PF0007617=RRM_1=PU(49.2=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCAGAGCACTCTTGGCTGA
R:
TGAGTAAGGGTCTCGGTGAAC
Band lengths:
302-1116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]