HsaALTA0007083-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:29434]
Coordinates
chr1:173912580-173915746:-
Coord C1 exon
chr1:173915614-173915746
Coord A exon
NA
Coord C2 exon
chr1:173912580-173912726
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
GTAACAGGCTGGTGTTGCAGAGG
3' ss Score
2.11
Exon sequences
Seq C1 exon
GGAGAGAATATCTATGTCAGAAGTGGCCAGTCATGGAAAACCCCTTCCATCTGCTGAGAGAGAACAGCTACGACTAGAATTGCAGCAATTGAACCATCAGATTAGCCAGCAGACCCAGCTACGTGGACTAGAG
Seq A exon
NA
Seq C2 exon
AGGGAGGCAAACACCCTGGCAGGCCAGTCACAGCCCCCACCACCGCCACCTCCAAAATGGCCTGGGATGATCTCAAGTGAGCAGTTGAGCTTGGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-20-24,20-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.987
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCAGCTACGTGGACTA
R:
GGTGCAGTTCCAAGCTCAACT
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)