HsaEX0052829 @ hg19
Exon Skipping
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:29434]
Coordinates
chr1:173910403-173915746:-
Coord C1 exon
chr1:173915614-173915746
Coord A exon
chr1:173912580-173912753
Coord C2 exon
chr1:173910403-173910518
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGCTTTATGCACTAGGCT
3' ss Score
5.41
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGAGAATATCTATGTCAGAAGTGGCCAGTCATGGAAAACCCCTTCCATCTGCTGAGAGAGAACAGCTACGACTAGAATTGCAGCAATTGAACCATCAGATTAGCCAGCAGACCCAGCTACGTGGACTAGAG
Seq A exon
GCTGTTAGTAACAGGCTGGTGTTGCAGAGGGAGGCAAACACCCTGGCAGGCCAGTCACAGCCCCCACCACCGCCACCTCCAAAATGGCCTGGGATGATCTCAAGTGAGCAGTTGAGCTTGGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATG
Seq C2 exon
GAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.984 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATATCTATGTCAGAAGTGGCC
R:
TGTCAATGTAAGGTCCTCAGCC
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)