MmuEX6028622 @ mm9
Exon Skipping
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:162893839-162895919:+
Coord C1 exon
chr1:162893839-162893971
Coord A exon
chr1:162895081-162895251
Coord C2 exon
chr1:162895804-162895919
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTTGGCTTTGTGCACTAGGCT
3' ss Score
5.85
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGAAAATGTCCATGGCAGAAGTGGCCAGTCATGGAAAACCCCTTCTATCTGCTGAAAGAGAACAATTACGGCTAGAATTGCAGCAGCTGAACCATCAGATCAGCCAGCAGACCCAGCTACGAGGACTAGAG
Seq A exon
GCTGTTAGTAACCGGCTGGTGTTACAGAGGGAGGTGAACACCCTGGCAAGCCAGCCACAGCCCCCTCAGCTGCCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGCTCAGCTTGGAACTGCATCAGGTGGAAAGAGAAATTGGGAAGAGGACCCGGGAATTGAGTATG
Seq C2 exon
GAGAACCAGTGTTCTGTAGACATGAAAAGCAAACTGGGTACAAGCAAGCAAGCAGAAAATGGCCAGCCCGAGCCCCAAAACAAGATCCGCACTGAGGACCTTACATTGACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423-'18-24,'18-22,19-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=0.872 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAAATGTCCATGGCAGA
R:
TCAATGTAAGGTCCTCAGTGCG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: