DreEX6025497 @ danRer10
Exon Skipping
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7286138-7286667:-
Coord C1 exon
chr2:7286577-7286667
Coord A exon
chr2:7286322-7286483
Coord C2 exon
chr2:7286138-7286232
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATGTTGCATGCGCTCTCAGGCT
3' ss Score
7.25
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTGCCTGTGTCTGGCCCGGACCGTGAGCAGCTCAAAATTGAGCTCCAGCAAGTTAACCAACAGATCAGTCAGCAGACCCGCGGCATGGAG
Seq A exon
GCTGCCAGTAACTCCATGCTCCTGCAGAGGGAGGCGTGTGCGCTGGCGGCTCAGCCCTCCGCTGGGGTCAAGTGGTCTTCAGGAGCCACAGTATCTAGTGAGCAGCTCAGCCGAGAGCTCGATCACGTAGAGCGAGAGATCAGAACTCGGGAGATCGCCATG
Seq C2 exon
GAGAACCAGGTGGCTCACGAATACAAGCTGAAGGCCATTGAGAACGGGCAGCCTGACCATAAAGCCCAACTGGAGGAACTCTCCTTAGCACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182-'25-26,'25-24,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=0.593 C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCTGTGTCTGGCCC
R:
CCCAGTGCTAAGGAGAGTTCC
Band lengths:
186-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]