GgaEX0006197 @ galGal4
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr8:7350799-7353817:+
Coord C1 exon
chr8:7350799-7350934
Coord A exon
chr8:7352955-7353098
Coord C2 exon
chr8:7353702-7353817
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTAACAGGCTGCTGTTGCAGAGG
3' ss Score
2.58
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGAGACTGTCCATGTCAGATGTGGCTGGTCATGGAAAACAGTTGCCCTCAGCTGAGCGGGAGCAACAGCTGCGCATGGAGCTGCAGCAAGTGGACCATCAGATTAGCCAGCAGACACAAATGAGAGGACTAGAG
Seq A exon
AGGGAGGCGACTACCCTGGCAGGCCAACCACAGCCCCCACCCCCACCTCCCAAGTGGCCTGGGATGATCTCAAGTGAACAGCTGAGCTTGGAGCTACACCAGGTGGAAAGGGAAATTGGGAAGAGAACCCGGGAGCTGAGCATG
Seq C2 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.990 C2=0.949
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGTCAGATGTGGCTGG
R:
CTGAATGCCAGTGCGAGGTC
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]