GgaEX0006197 @ galGal3
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7686148-7689166:+
Coord C1 exon
chr8:7686148-7686283
Coord A exon
chr8:7688304-7688447
Coord C2 exon
chr8:7689051-7689166
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTAACAGGCTGCTGTTGCAGAGG
3' ss Score
2.58
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGAGAGACTGTCCATGTCAGATGTGGCTGGTCATGGAAAACAGTTGCCCTCAGCTGAGCGGGAGCAACAGCTGCGCATGGAGCTGCAGCAAGTGGACCATCAGATTAGCCAGCAGACACAAATGAGAGGACTAGAG
Seq A exon
AGGGAGGCGACTACCCTGGCAGGCCAACCACAGCCCCCACCCCCACCTCCCAAGTGGCCTGGGATGATCTCAAGTGAACAGCTGAGCTTGGAGCTACACCAGGTGGAAAGGGAAATTGGGAAGAGAACCCGGGAGCTGAGCATG
Seq C2 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587_CASSETTE1
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.947 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGTCAGATGTGGCTGG
R:
CTGAATGCCAGTGCGAGGTC
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]