GgaINT0036076 @ galGal3
Intron Retention
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7686148-7689166:+
Coord C1 exon
chr8:7686148-7686283
Coord A exon
chr8:7686284-7689050
Coord C2 exon
chr8:7689051-7689166
Length
2767 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TCCTCTTTTTTTTTTTAAAGGAA
3' ss Score
10.31
Exon sequences
Seq C1 exon
GGAGAGACTGTCCATGTCAGATGTGGCTGGTCATGGAAAACAGTTGCCCTCAGCTGAGCGGGAGCAACAGCTGCGCATGGAGCTGCAGCAAGTGGACCATCAGATTAGCCAGCAGACACAAATGAGAGGACTAGAG
Seq A exon
GTTGGTAGCAGCATTTGTAAGAGTGATGAGTAGTGGTAGGAGGAGAGAGTTGAAGCTAACAGAGCTGCTTTTTTTTTTACGTTGATGATACTTCTCTCTGTAATAATACTCGGTATCAATATTAATTCTGACGACAGACATCAGGGCTGTGGTAGAAGTGTAAACTACTTTGCCTAGCAGCAGAAACTTCCCTGGACTTCACATTAAGCAAATCAACACCATACTTGAATCTGCACTCTGTGCTCATTCATGTTTGCTTTCATTATCTCTCTCACTCGCCCTCTATGTTCACCTGTTCGCTCAGAGGCAAACTTTTTTTAAAGTGCATGTTTGTTCCTCTTGGCTACACTGGCACTGAAAATGTCTGATTTTATGTGCAGACAGCTGTGCGACTTTCATCTGTTTCATGTTTGGCTTTGTGTTGTACCTGTTTCTTCCTAAGTAGCACAAGCCACAAAAGTGAAAAATAACTATTAACTACAGTTAGCTGAAAAAAGTAAAGCTTAATATTTTGTCTCCGTTTAGAAGAAATGTTGCCACTTGCAACATAAAGTAATATGAGAGTCTGCATTTGTAAAGTAATTAATGAGCTGAAATTTTTGTTTGTATTTTGTGAGATTGAAATAGAAGGAGAAATATCAAGGCATAATGAAGCAATGGATATAGCAAATCTTTTCTTTTTTTTTCATTTTCTTAATGCATTGTGGAGGAGAAATCAGTAAACATCCTCTGTCTTCAGAAAACACTAGAATACTATTCTAGGTTCCTCAGCAACCACTCATCAGTTGTATTTGCAGGAGGAATTGCTGTAAGTAGTGCGTGGGTAGCAGCTTCTACTGAAGCTGTGGTTATATGAGAACTTGTGTTAAGTCAGAAGAATTATTGCTGGTTTGTCATAATAGCTGACAAATTTGAGGTGGCAGCAGCAGTTACAAGAAGTGTATATTTTTTAGATACTTGAAACATAACTTGTGTTCTTGTGCTCTTGTTTGGGAACAAGAGAAGAGATTGTTTAAAATTTTGCATGTCTACTTTTGCCATAATGGAAGAGTACTGGAAAGTTTTCAAAAACCTTGAGCGGCCTGCCTCTCCTCCTCATTGTTAGTGCAATTGTGTCCGTGTTAAATCCTACATAGTTGAGTTTGGACTTTGATTTTACCATAATTTGGATTTGTTGGAACTCACGGGTTATTGTGAGTAACTGCTGCTTTCAAGTTGTATCTATTTGAAATACAGGAAGCTTTATAATTTGCCTGTTACCAGGTTGTCACGGTCACTAAAATTCAAGTCTGAGCATAAATAACTAGACTATCCTGCTTTTTTGTCAAATTAATGAGCACTTCTACTTGTAGACCGGCCACATGCTTGGCTGTAAGTAGATGGTGAAGTTCTTTGTGTTTAAATGCAGAGCACAAACTCATGGAACTCATTCTCAGATGTTACCAGGTTTTTGGAGTGGCTGACATGGTTACTGTTTTTAACTTGGCTGCTGGTAACCTGTGGCTACAGTCTTCTGATCCTCTCTGTTCCTGTGCTTCCTTATCTGGGTTGGTAGAGAATGACATATTATGCCATTATTTTATATATGTACTGAACTCTAACATAGAGCTGTGATAAATTCTACACTATAAAACAAAGCAGCAGGTTTATGTATCTGCTTTTACCTTTTACTCAACAGGTAGCTAACAAAAGAGTTTTTGCTCTTGTGCTTTACCTTACTTCCAGGAAGGGAGAGGCATACAGGGAAAATCCATGCAACTTTGTTACAGTAAAAGGTATTTAACGCTTGAAGAATGAAAAGATATGTCTGTATGTAGAAGAGTTGTTCAAAGTTGCACTGAAGTTATTATTTCAGATGGGACCTTATTAAGCATGGAGTGAGAAGGCCTTGGTTTTACAAATAAGCAGTACTCCAGAGTTATGGCCTAGTGCCCTTTTTGTGCTTGGTGTGCCATGTGCTCAGTTGTGTATGTGCTTGGCTTTATGCATTTAGGCTGTTAGTAACAGGCTGCTGTTGCAGAGGGAGGCGACTACCCTGGCAGGCCAACCACAGCCCCCACCCCCACCTCCCAAGTGGCCTGGGATGATCTCAAGTGAACAGCTGAGCTTGGAGCTACACCAGGTGGAAAGGGAAATTGGGAAGAGAACCCGGGAGCTGAGCATGGTGAGTGCTGTGGGGGTGGGAGGCAGAGAGGTGGAGTGGAGGGCTGTGTAGCTGCCTGAAGCCCTTTCACCTCAGCAAAACGGCTCTCTGCTGGCTGCCAGCAGCCGGAGTCACCCATCTCCGTATTCACCTCTTGGTTCTTTGAAACCTCCAGAGAAGTTTCGTGATTCTTCGTAAAGGATTTGAATTTGAGCCACTTTAAAATACTTTGCTTTTATTTTGTTGCTGTTAGAAAATAAGTGTGGCATTGGATTTGTTGAAAATATTGTCTCCAAGATCGCTGTGCTATGAGTTGTGTAAATCACTTTAGTACAGAAAACATCTCCTGCAGGTGTAGGCTAGTGTTCAGTGGTCTTTGTGCTGTTACAGTCTGTGGTCTTTGCGTGTTGTTACAAGAATTATCCCTTCCTTTCAGGAAGTACTACATCCTGAGATGATGAGAGTATCTTACCAAGTCTCTTTTCTTGTCTCATGGCTTTTGTGGGCTACGCTGTGCAACTCCAGTTTACAGGCTTCCATCATTGGTCCCAAAGAACAAAGTCCGAAGTTCTTTTAACACCGTGTTAAAGAGTTATTTCTTCTCTCCTCTTTTTTTTTTTAAAG
Seq C2 exon
GAAAGCCAGTCTTCACTGGATATAAAAAACAAACTGGGCACCACTAAACAGACAGAAAATGGACAATTAGAACCACAAAGCAAGGTTCCAGCTGAGGACCTCGCACTGGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587:ENSGALT00000039453:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]