GgaALTA0002327-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7686184-7688447:+
Coord C1 exon
chr8:7686184-7686283
Coord A exon
chr8:7688277-7688303
Coord C2 exon
chr8:7688304-7688447
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
GCTTGGCTTTATGCATTTAGGCT
3' ss Score
5.03
Exon sequences
Seq C1 exon
AAAACAGTTGCCCTCAGCTGAGCGGGAGCAACAGCTGCGCATGGAGCTGCAGCAAGTGGACCATCAGATTAGCCAGCAGACACAAATGAGAGGACTAGAG
Seq A exon
GCTGTTAGTAACAGGCTGCTGTTGCAG
Seq C2 exon
AGGGAGGCGACTACCCTGGCAGGCCAACCACAGCCCCCACCCCCACCTCCCAAGTGGCCTGGGATGATCTCAAGTGAACAGCTGAGCTTGGAGCTACACCAGGTGGAAAGGGAAATTGGGAAGAGAACCCGGGAGCTGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-21-25,21-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAGTGGACCATCAGAT
R:
TGAGATCATCCCAGGCCACTT
Band lengths:
124-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]