HsaALTA0007083-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173943442-173946608:-
Coord C1 exon
chr1:173946476-173946608
Coord A exon
chr1:173943589-173943615
Coord C2 exon
chr1:173943442-173943588
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCA
5' ss Score
6.43
3' ss Seq
TGCTTGGCTTTATGCACTAGGCT
3' ss Score
5.41
Exon sequences
Seq C1 exon
GGAGAGAATATCTATGTCAGAAGTGGCCAGTCATGGAAAACCCCTTCCATCTGCTGAGAGAGAACAGCTACGACTAGAATTGCAGCAATTGAACCATCAGATTAGCCAGCAGACCCAGCTACGTGGACTAGAG
Seq A exon
GCTGTTAGTAACAGGCTGGTGTTGCAG
Seq C2 exon
AGGGAGGCAAACACCCTGGCAGGCCAGTCACAGCCCCCACCACCGCCACCTCCAAAATGGCCTGGGATGATCTCAAGTGAGCAGTTGAGCTTGGAACTGCACCAGGTGGAAAGGGAAATCGGGAAGAGAACACGGGAACTGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-45-48,45-47,45-46,45-45-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.955
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCAGCTACGTGGACTA
R:
GGTGCAGTTCCAAGCTCAACT
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains