MmuALTA0015024-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040423 | Rc3h1
Description
RING CCCH (C3H) domains 1 [Source:MGI Symbol;Acc:MGI:2685397]
Coordinates
chr1:162893839-162895251:+
Coord C1 exon
chr1:162893839-162893971
Coord A exon
chr1:162895081-162895107
Coord C2 exon
chr1:162895108-162895251
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGCTTGGCTTTGTGCACTAGGCT
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGAGAAAATGTCCATGGCAGAAGTGGCCAGTCATGGAAAACCCCTTCTATCTGCTGAAAGAGAACAATTACGGCTAGAATTGCAGCAGCTGAACCATCAGATCAGCCAGCAGACCCAGCTACGAGGACTAGAG
Seq A exon
GCTGTTAGTAACCGGCTGGTGTTACAG
Seq C2 exon
AGGGAGGTGAACACCCTGGCAAGCCAGCCACAGCCCCCTCAGCTGCCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGCTCAGCTTGGAACTGCATCAGGTGGAAAGAGAAATTGGGAAGAGGACCCGGGAATTGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040423-18-23,18-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.867 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAGAATTGCAGCAGCTGA
R:
ATTCCAGGCCATTTTGGAGGC
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: