RnoALTA0033394-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000002750 | Rc3h1
Description
ring finger and CCCH-type domains 1 [Source:RGD Symbol;Acc:1563512]
Coordinates
chr13:78782766-78784642:+
Coord C1 exon
chr13:78782766-78782898
Coord A exon
chr13:78784472-78784498
Coord C2 exon
chr13:78784499-78784642
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
TGCTTGGGTTTGTGCACTAGGCT
3' ss Score
5.98
Exon sequences
Seq C1 exon
GGAGAAAATGTGCATGGCAGAAGTGGCCAGTCATGGAAAACCCCTTCTGTCTGCTGAAAGAGAACAATTACGGCTAGAATTGCAGCAACTGAACCATCAGATCAGCCAGCAGACCCAGCTACGTGGACTAGAG
Seq A exon
GCTGTTAGTAACCGGCTGGTGTTACAG
Seq C2 exon
AGGGAGGTGAACACCCTGGCAAGCCAGCCACAGCCCCCTCCGCTGCCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGCTAAGCTTGGAACTGCATCAGGTGGAAAGGGAAATTGGGAAGAGGACCCGGGAATTGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002750-25-33,25-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCCAGCTACGTGGACTA
R:
GCAGTTCCAAGCTTAGCTGCT
Band lengths:
121-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]