DreALTA0002666-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7286322-7286667:-
Coord C1 exon
chr2:7286577-7286667
Coord A exon
chr2:7286457-7286483
Coord C2 exon
chr2:7286322-7286456
Length
27 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
CATGTTGCATGCGCTCTCAGGCT
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTTGCCTGTGTCTGGCCCGGACCGTGAGCAGCTCAAAATTGAGCTCCAGCAAGTTAACCAACAGATCAGTCAGCAGACCCGCGGCATGGAG
Seq A exon
GCTGCCAGTAACTCCATGCTCCTGCAG
Seq C2 exon
AGGGAGGCGTGTGCGCTGGCGGCTCAGCCCTCCGCTGGGGTCAAGTGGTCTTCAGGAGCCACAGTATCTAGTGAGCAGCTCAGCCGAGAGCTCGATCACGTAGAGCGAGAGATCAGAACTCGGGAGATCGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182-25-25,25-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.863 A=NA C2=0.593
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGTGAGCAGCTCAAAAT
R:
CTGAAGACCACTTGACCCCAG
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]