HsaALTA0007084-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173938771-173941380:-
Coord C1 exon
chr1:173941265-173941380
Coord A exon
chr1:173938872-173938874
Coord C2 exon
chr1:173938771-173938871
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCAAAATTTTAAAATGTCAGCAG
3' ss Score
-0.44
Exon sequences
Seq C1 exon
GAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG
Seq A exon
CAG
Seq C2 exon
TGATGTACCAAATGGATCAGCCTTGACACAAGAGAATATCAGCCTCCTATCAAACAAGACCAGCTCTCTGAACCTGTCAGAGGACCCTGAGGGAGGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-48-55,48-54,48-53-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGAGGACCTTACATTG
R:
TGACAGGTTCAGAGAGCTGGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains