HsaALTA0007104-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000214022 | REPIN1
Description
replication initiator 1 [Source:HGNC Symbol;Acc:17922]
Coordinates
chr7:150066760-150068420:+
Coord C1 exon
chr7:150066760-150066957
Coord A exon
chr7:150068317-150068319
Coord C2 exon
chr7:150068320-150068420
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGAG
5' ss Score
0.88
3' ss Seq
CTGTGCTTTTCCACCCTCAGCAG
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG
Seq A exon
CAG
Seq C2 exon
AGGAAGAACCGATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGACTCCTTTCTGGGCCCTCCCAGGAGTCACCCCAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214022-6-23,6-22,6-21-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=7.4),PF056057=zf-Di19=WD(100=17.7),PF0009621=zf-C2H2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=8.4)
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGTATCCCCAGGAACA
R:
ACGTTCCAGCATCGGTTCTTC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)