HsaEX0053043 @ hg19

Exon Skipping

Gene

ENSG00000214022 | REPIN1

Description

replication initiator 1 [Source:HGNC Symbol;Acc:17922]

Coordinates

chr7:150065879-150068769:+

Coord C1 exon

chr7:150065879-150066030

Coord A exon

chr7:150066760-150066957

Coord C2 exon

chr7:150068317-150068769

Length

198 bp

Sequences

Splice sites

3' ss Seq

TTTCTCTTCCCTCCCCACAGGTA

3' ss Score

14.75

5' ss Seq

AGGGTAGAG

5' ss Score

0.88

Exon sequences

Seq C1 exon

CCCGGCGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCGGCGGGGCGGGGAGCGAGAGTGGGCCGCGGAGGCCGGCCTTCGGGCTCCATGGACGGGCGCCGCGTCCCTGCACAGCCCGCCGCAGAG

Seq A exon

GTAAGGCTGGCCTCTCTGCAGTCAGAGGTCTGAGCTCTGCCATGGGGATAGGGGTGTCTTTATTACTGCAGTTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG

Seq C2 exon

CAGAGGAAGAACCGATGCTGGAACGTCGTTGCAGGGGCCCCCTGGCCATGGGCCTGGCCCAGCCCCGACTCCTTTCTGGGCCCTCCCAGGAGTCACCCCAGACCCTGGGGAAGGAGTCCCGCGGGCTGAGGCAACAAGGCACGTCAGTGGCCCAGTCTGGTGCCCAAGCCCCAGGCAGGGCCCATCGCTGTGCCCACTGTCGAAGGCACTTCCCTGGCTGGGTGGCTCTGTGGCTTCACACCCGCCGGTGCCAGGCCCGGCTGCCCTTGCCCTGCCCTGAGTGTGGCCGTCGCTTTCGCCATGCCCCCTTCTTAGCACTGCACCGCCAGGTCCATGCTGCTGCCACCCCAGACCTGGGCTTTGCCTGCCACCTCTGTGGGCAGAGCTTCCGAGGCTGGGTGGCCCTGGTTCTGCATCTGCGGGCCCATTCAGCTGCAAAGCGGCCCATCGCTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000214022-'2-22,'2-15,6-22

Average complexity

C2

Mappability confidence:

92%=67=100%

Protein Impact

NA

Show structural model

Features

Disorder rate (Iupred):

C1=1.000 A=0.365 C2=0.386

Domain overlap (PFAM):

C1:

NO

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=4.0),PF0009621=zf-C2H2=WD(100=4.0),PF138941=zf-C2H2_4=WD(100=4.2),PF0009621=zf-C2H2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF138941=zf-C2H2_4=WD(100=4.2)

Main Inclusion Isoform:

ENSP00000417291