HsaALTA0007403-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000007376 | RPUSD1
Description
RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:14173]
Coordinates
chr16:837604-838383:-
Coord C1 exon
chr16:838256-838383
Coord A exon
chr16:837646-837744
Coord C2 exon
chr16:837604-837645
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
ACCCACGCGTGGCTCGGCAGGCC
3' ss Score
5.15
Exon sequences
Seq C1 exon
GGGCGGAAGCGCTGCCAGGCGTCCGGAGCGGAGCTTCCAGGGTCTCTGGGTCGCCAGCGCGCGGGCGCGCGGCTGGAGCCGGCGCCGGGCACGGCATCGGGGGCCTGGACTGCACGGCCCGGCAGCAG
Seq A exon
GCCGGCCATGGAGCCAGGCAGCGTGGAGAACCTGTCCATCGTGTACCGGAGCCGCGACTTCCTGGTGGTCAACAAGCACTGGGACGTTCGCATTGACAG
Seq C2 exon
CAAGGCGTGGCGGGAGACTCTGACCCTGCAGAAGCAGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007376-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0160011=Corona_S1=PU(45.5=98.4),PF0084917=PseudoU_synth_2=PU(26.5=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCTTCCAGGGTCTCTG
R:
GCTTCTGCAGGGTCAGAGTCT
Band lengths:
135-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)