MmuALTA0015643-3/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000041199 | Rpusd1
Description
RNA pseudouridylate synthase domain containing 1 [Source:MGI Symbol;Acc:MGI:1919186]
Coordinates
chr17:25727751-25728391:+
Coord C1 exon
chr17:25727751-25727847
Coord A exon
chr17:25728203-25728256
Coord C2 exon
chr17:25728257-25728391
Length
54 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCACTCCCACCTGCGTGCAGCCC
3' ss Score
7.33
Exon sequences
Seq C1 exon
GCGCGCCAGCCAGGCCAAGACCTGGTTCCTAGTATAGGGAAGCGAGGTTGGATGCAGAGCTGAGAATTGACATCCTGGTCCCTTGGCCCTGTTGCAG
Seq A exon
CCCCACCATGGAGCCTGGCAGCATGGAAAATCTGTCCATCGTGTACCAGAGCAG
Seq C2 exon
CGACTTCCTGGTGGTGAACAAGCACTGGGACCTGCGCATTGATAGCAAGACCTGGCGGGAGACCCTGACCCTACAGAAGCAGCTCCGACACCACTTCCCAGAGCTGGCTGACCCTGACACCTGCTATGGGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041199-1-4,1-3,1-2,1-1,1-0-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0084917=PseudoU_synth_2=PU(26.5=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGATGCAGAGCTGAGA
R:
GCTTCTGTAGGGTCAGGGTCT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types